View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627_high_9 (Length: 422)

Name: NF4627_high_9
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627_high_9
NF4627_high_9
[»] chr7 (1 HSPs)
chr7 (19-410)||(44870732-44871123)
[»] chr3 (3 HSPs)
chr3 (32-410)||(47528675-47529053)
chr3 (45-410)||(47523327-47523692)
chr3 (193-413)||(47550390-47550610)
[»] chr5 (2 HSPs)
chr5 (35-409)||(9819883-9820239)
chr5 (35-409)||(9853741-9854097)
[»] chr6 (4 HSPs)
chr6 (186-373)||(21080654-21080839)
chr6 (218-412)||(21062006-21062200)
chr6 (218-412)||(21081399-21081593)
chr6 (218-373)||(21061293-21061446)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 44870732 - 44871123
Alignment:
Q  19 agtaaaatcttcaccatcatcaacactactcacattcttcaacagtgtccaatttattttatttgcaaccttaattggtttccctaatagcttcttcaga 118  Q
    |||||||||| ||||||||||  ||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||    
T  44870732 agtaaaatctccaccatcatcgtcactactcacattcttcaacaatgtccaatttatattatctgcaaccttaattggtttccccaatagcttctttaga 44870831  T
Q  119 cagaagaacatcttcccgcaaactacactgcaaaaccaattcttatttttaacgttgctctccatgcgactagatccaaatcttgtagcctttacacatc 218  Q
    || |||||||| ||||| |||||||||||||||||||||||||| |||||||  ||||||||  || ||||||||||||||||||||| ||||||||| |    
T  44870832 cataagaacatgttcccacaaactacactgcaaaaccaattcttctttttaatattgctctctgtgtgactagatccaaatcttgtagtctttacacacc 44870931  T
Q  219 caaagtgaaaattttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgca 318  Q
    |||||||||| |||||||||||||| ||||| ||||||| |||||| |||||  |||||||||||| | |||||||||| || ||||| |||||||||||    
T  44870932 caaagtgaaatttttgctcacattgtacacatacaagaaaattgttttcattgccatctgcacattcttgtttgcatttgggtcgatagcatattttgca 44871031  T
Q  319 acaacaagttggacaaaaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagta 410  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  44871032 acaacaagttggacagaaccaatcaccatctggaactcgatcaagacctaaacaaccaaggtggaatgcagaaggacatcgatcacatagta 44871123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 410
Target Start/End: Complemental strand, 47529053 - 47528675
Alignment:
Q  32 ccatcatcaacactactcacattcttcaacagtgtccaatttattttatttgcaaccttaattggtttccctaatagcttcttcagacagaagaacatct 131  Q
    ||||||||| ||||| ||||||||||||||||||||||| |||  || | ||||||||||||||||||||  ||||||||||| ||||| | |||| | |    
T  47529053 ccatcatcatcactattcacattcttcaacagtgtccaagttagattgtctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgt 47528954  T
Q  132 tcccgcaaactacactgcaaaaccaattcttatttttaacgttgctctccatgcgactagatccaaatcttgtagcctttacacatccaaagtgaaaatt 231  Q
    || ||||||||| | |||||||||||||||| |||||||| || ||||||||| |||||||| || ||| ||| ||||||||||| ||||||||||| ||    
T  47528953 tcacgcaaactatattgcaaaaccaattcttctttttaacattactctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaattt 47528854  T
Q  232 ttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgcaacaacaagttgga 331  Q
     ||||||||||||||||||||||||||||||||||||||   ||||| ||||| | |||| ||||| || ||| ||||||||||||||||||||||||||    
T  47528853 ctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacatttaggtcgacaacatattttgcaacaacaagttgga 47528754  T
Q  332 caaaaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagta 410  Q
    || |||||||||||||| |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  47528753 cagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgcagaaggacatcgatcacatagta 47528675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 45 - 410
Target Start/End: Complemental strand, 47523692 - 47523327
Alignment:
Q  45 tactcacattcttcaacagtgtccaatttattttatttgcaaccttaattggtttccctaatagcttcttcagacagaagaacatcttcccgcaaactac 144  Q
    |||||||||||||||| | ||||||| |||  |||  ||||||  | |||||||||||| | | |||||| ||||| |||||||| || || ||||||||    
T  47523692 tactcacattcttcaataatgtccaagttagattagctgcaactgttattggtttccctgacaacttctttagacataagaacatgttaccacaaactac 47523593  T
Q  145 actgcaaaaccaattcttatttttaacgttgctctccatgcgactagatccaaatcttgtagcctttacacatccaaagtgaaaattttgctcacattga 244  Q
    |||||||||||||||||| |||| | | |||||||| ||| |||| ||||||| || |  |||||||||||| ||||| ||||| |||||  ||||||||    
T  47523592 actgcaaaaccaattcttcttttcaccattgctctcaatgtgacttgatccaagtcctaaagcctttacacacccaaaatgaaacttttgtgcacattga 47523493  T
Q  245 acacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgcaacaacaagttggacaaaaccaatcac 344  Q
    |||||||||||||||||| | |||||  |||||||||||| | | |||||||| || ||||| ||||||||||||||||| |||||||| |||||||| |    
T  47523492 acacaaacaagaatattgctgtcattgccatctgcacattcttgcttgcatttgggtcgatagcatattttgcaacaacatgttggacagaaccaatcgc 47523393  T
Q  345 catctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagta 410  Q
    |||| ||||||||||  ||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  47523392 catccggaactcgatcgagacctaaacaactgaggtggaatgcagaaggacattgatcacacagta 47523327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 413
Target Start/End: Complemental strand, 47550610 - 47550390
Alignment:
Q  193 tccaaatcttgtagcctttacacatccaaagtgaaaattttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttg 292  Q
    ||||| |||||| |||||| |||| ||||||||||| ||| | ||||||||||||||| |||||||||  | |||| | |||| |||| ||| | |||||    
T  47550610 tccaattcttgttgcctttgcacacccaaagtgaaattttcgttcacattgaacacaagcaagaatatcatcatcaatatcatttgcaaattcttgtttg 47550511  T
Q  293 cattttgggcgataacatattttgcaacaacaagttggacaaaaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaag 392  Q
    ||||| ||  || |||||||| | ||||| ||| | ||||| |||||   |||||| ||| |||||||  ||||||||||| |   |||||| | |||||    
T  47550510 catttgggttgacaacatattctacaacagcaactcggacataaccacataccatccggatctcgattgggacctaaacaatcagagtggaacgaagaag 47550411  T
Q  393 gacatcgatcacatagtatta 413  Q
    |||||| |||||||| |||||    
T  47550410 gacatccatcacataatatta 47550390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 409
Target Start/End: Original strand, 9819883 - 9820239
Alignment:
Q  35 tcatcaacactactcacattcttcaacagtgtccaatttattttatttgcaaccttaattggtttccctaatagcttcttcagacagaagaacatcttcc 134  Q
    ||||||||||||||||||||||||| || ||||||  |||  |||| |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||    
T  9819883 tcatcaacactactcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcc 9819982  T
Q  135 cgcaaactacactgcaaaaccaattcttatttttaacgttgctctccatgcgactagatccaaatcttgtagcctttacacatccaaagtgaaaattttg 234  Q
    | ||||| |||||||||||||||||||                  ||||| || || || ||| || |  |||||||||||||||||||||| | |||||    
T  9819983 cacaaaccacactgcaaaaccaattct------------------ccatgtgattaaattcaattcctacagcctttacacatccaaagtgatatttttg 9820064  T
Q  235 ctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgcaacaacaagttggacaa 334  Q
    ||||||||||||||||||||||||||||||||| || | ||||  ||||| | |||||||||| || ||||| ||||||||||||||||||||||||||     
T  9820065 ctcacattgaacacaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgatagcatattttgcaacaacaagttggacag 9820164  T
Q  335 aaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagt 409  Q
    ||||| ||||||  |||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  9820165 aaccattcaccaattggaactcgattgagacctaaacaacctaggtggaatgcagaagggcatcgatcacatagt 9820239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 409
Target Start/End: Complemental strand, 9854097 - 9853741
Alignment:
Q  35 tcatcaacactactcacattcttcaacagtgtccaatttattttatttgcaaccttaattggtttccctaatagcttcttcagacagaagaacatcttcc 134  Q
    ||||||||||||||||||||||||| || ||||||  |||  |||| |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||    
T  9854097 tcatcaacactactcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcc 9853998  T
Q  135 cgcaaactacactgcaaaaccaattcttatttttaacgttgctctccatgcgactagatccaaatcttgtagcctttacacatccaaagtgaaaattttg 234  Q
    | ||||| |||||||||||||||||||                  ||||| || || || ||| || |  ||||||||| |||||||||||| | |||||    
T  9853997 cacaaaccacactgcaaaaccaattct------------------ccatgtgattaaattcaattcctacagcctttacgcatccaaagtgatatttttg 9853916  T
Q  235 ctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgcaacaacaagttggacaa 334  Q
    ||||||||||||||||||||||||||||||||| || | ||||  ||||| | |||||||||| || ||||| ||||||||||||||||||||||||||     
T  9853915 ctcacattgaacacaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgatagcatattttgcaacaacaagttggacag 9853816  T
Q  335 aaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagt 409  Q
    ||||| ||||||  |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9853815 aaccattcaccaattggaactcgattgagacctaaacaaccgaggtggaatgcagaagggcatcgatcacatagt 9853741  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 186 - 373
Target Start/End: Original strand, 21080654 - 21080839
Alignment:
Q  186 gactagatccaaatcttgtagcctttacacatccaaagtgaaaattttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattg 285  Q
    |||||||||||| || | ||||||||||||| |||||||||||||||| | |||||||| ||||||||| ||| ||||| | |||| ||| ||||||||     
T  21080654 gactagatccaattcatatagcctttacacacccaaagtgaaaatttt-cacacattgatcacaaacaa-aatgttgttttgatttccatatgcacattc 21080751  T
Q  286 tggtttgcattttgggcgataacatattttgcaacaacaagttggacaaaaccaatcaccatctggaactcgattaagacctaaacaa 373  Q
    |||||| ||||| || ||||| |||||||||||||||||| || || | ||||||||||||||  |||||||||| ||||||||||||    
T  21080752 tggttttcatttaggtcgatagcatattttgcaacaacaaattcgaaagaaccaatcaccatccagaactcgattgagacctaaacaa 21080839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 218 - 412
Target Start/End: Complemental strand, 21062200 - 21062006
Alignment:
Q  218 ccaaagtgaaaattttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgc 317  Q
    ||||| ||||| ||||||||||||||||||||  |||||||||||||||||||  ||| |||||| | | ||||||| |||||  |||||||||||||||    
T  21062200 ccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatattttgc 21062101  T
Q  318 aacaacaagttggacaaaaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagtatt 412  Q
    | | ||||||||||| |||| |||||| |||   ||||| ||  ||||||||| ||  | |||||||||||||||||||||||||||||| ||||    
T  21062100 agccacaagttggacgaaactaatcactatccaaaactccatcgagacctaaagaacagcggtggaatgcagaaggacatcgatcacataatatt 21062006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 218 - 412
Target Start/End: Complemental strand, 21081593 - 21081399
Alignment:
Q  218 ccaaagtgaaaattttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgc 317  Q
    ||||| ||||| ||||||||||||||||||||  |||||||||||||||||||  ||| |||||| | | ||||||| |||||  |||||||||||||||    
T  21081593 ccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatattttgc 21081494  T
Q  318 aacaacaagttggacaaaaccaatcaccatctggaactcgattaagacctaaacaaacgaggtggaatgcagaaggacatcgatcacatagtatt 412  Q
    | | ||||||||||| |||| |||||| |||   ||||| ||  ||||||||| ||  | |||||||||||||||||||||||||||||| ||||    
T  21081493 agccacaagttggacgaaactaatcactatccaaaactccatcgagacctaaagaacagcggtggaatgcagaaggacatcgatcacataatatt 21081399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 373
Target Start/End: Original strand, 21061293 - 21061446
Alignment:
Q  218 ccaaagtgaaaattttgctcacattgaacacaaacaagaatattgttatcattttcatctgcacattgtggtttgcattttgggcgataacatattttgc 317  Q
    |||||||||||||||| | |||||||| ||||||||| ||| ||||| | |||| ||| |||||||| |||||| ||||| || ||||| ||||||||||    
T  21061293 ccaaagtgaaaatttt-cacacattgatcacaaacaa-aatgttgttttgatttccatatgcacattctggttttcatttaggtcgatagcatattttgc 21061390  T
Q  318 aacaacaagttggacaaaaccaatcaccatctggaactcgattaagacctaaacaa 373  Q
    |||||||| || || | |||||||| |||||  |||||||||| ||||||||||||    
T  21061391 aacaacaaattcgaaagaaccaatccccatccagaactcgattgagacctaaacaa 21061446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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