View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4627_low_1 (Length: 673)
Name: NF4627_low_1
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 20 - 666
Target Start/End: Complemental strand, 42031360 - 42030705
Alignment:
| Q |
20 |
cggctttatcatcccattgtatctctcatctcagttgcgtcgtcccatcaaaaacttgtttcctactttggactctgcaaaaggaattgtgaattttggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031360 |
cggctttatcatcccattgtatctctcatctcagttgcgtcgtcccattgaaaacttgtttcctactttggactctgcaaaaggaattgtgaattttggt |
42031261 |
T |
|
| Q |
120 |
aacaattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42031260 |
aacaattctgaattttagaagcaatagtggttctacaaatgatttttttgttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaa |
42031161 |
T |
|
| Q |
220 |
agaagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgtttgtgttgtgaggaagtagcattagtgtcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42031160 |
agaagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgtttgtgttgtgaggaagtagcattagtgtcat |
42031061 |
T |
|
| Q |
320 |
tctgaggtgtgtggattttgcaagacttggtggctgttattaaccaaggctgactattacacagtatcctgggttttcttttctctagtgtgctgatgtt |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42031060 |
tctgagatgtgtggattttgcaagacttggtggctgttattaaccaaggctgactattacacagtatcctgggttttcttttctctagtgtgctgatgtt |
42030961 |
T |
|
| Q |
420 |
tgtgctataatcctgttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtt |
519 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42030960 |
tgtgctataatcctattgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtt |
42030861 |
T |
|
| Q |
520 |
tcggctaccttattaaacccatggtataaaatagcatcaagattaattttggttgtgggtaacttttggtttggagttttatggtttcaggtgtttg--- |
616 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030860 |
tcggctaccttattaaacccttagtataaaatagcatcaaaattaattttggttgtgggtaacttttggtttggagttttatggtttcaggtgtttgtat |
42030761 |
T |
|
| Q |
617 |
------tatttggtgttctgtctatatgcggcacctattgtttgtattgatgatgt |
666 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42030760 |
tgtttgtatttggtgttccgtctatatgcggcacctattgtttgtattgatgatgt |
42030705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 666
Target Start/End: Complemental strand, 5997282 - 5996628
Alignment:
| Q |
20 |
cggctttatcatcccattgtatctctcatctcagttgcgtcgtcccatcaaaaacttgtttcctactttggactctgcaaaaggaattgtgaattttggt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5997282 |
cggctttatcatcccattgtatctctcatctcagttgtgtcgtcccatcgaaaacgtgtttcctaccttggactctgcaaaaggaattgtgaattttggt |
5997183 |
T |
|
| Q |
120 |
aacaattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
5997182 |
aacaattctgaattttagaagcaatagtggttctacaaatgatttttt-gttgaattttgattaatttcgggtgctacatatcaacaaagaaaatgggaa |
5997084 |
T |
|
| Q |
220 |
agaagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgtttgtgttgtgaggaagtagcattagtgtcat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5997083 |
agaagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccacaagaatgtttgtgttgtgaggaagtagcattagtgtcat |
5996984 |
T |
|
| Q |
320 |
tctgaggtgtgtggattttgcaagacttggtggctgttattaaccaaggctgactattacacagtatcctgggttttcttttctctagtgtgctgatgtt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5996983 |
tctgaggtgtgtggattttgcaagacttggtggctgttattaaccaaggctgcctattacacagtagcctgggttttcttttctctggtgtgctgatgtt |
5996884 |
T |
|
| Q |
420 |
tgtgctataatcctgttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtt |
519 |
Q |
| |
|
|||| | | ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5996883 |
tgtgttgttatcctattgtgagtactgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtt |
5996784 |
T |
|
| Q |
520 |
tcggctaccttattaaacccatggtataaaatagcatcaagattaattttggttgtgggtaacttttggtttggagttttatggtttcaggtgtttg--- |
616 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |
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|
| T |
5996783 |
tcggctaccttattgaacccttagtataaaatagcatcaggattaattttggttgtgggtaacttttgatttcgagttttatggtttcgggtgtttgtat |
5996684 |
T |
|
| Q |
617 |
------tatttggtgttctgtctatatgcggcacctattgtttgtattgatgatgt |
666 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5996683 |
tgtttgtatttggtgttccgtctatatgaggcacctattgtttgtattgatgatgt |
5996628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 435 - 533
Target Start/End: Original strand, 16102105 - 16102203
Alignment:
| Q |
435 |
ttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
16102105 |
ttgtgagtactgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttatt |
16102203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 122 - 288
Target Start/End: Original strand, 16101938 - 16102103
Alignment:
| Q |
122 |
caattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaag |
221 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| | || |||||||||||||||||||||||| | |||| |
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|
| T |
16101938 |
caattttgaattttgtaagtaatagtggttctacaaatggtttttttgttgaattttgatttagtttaggtgctacatatcaacaaagaaaaatggaaag |
16102037 |
T |
|
| Q |
222 |
aagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgt |
288 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
16102038 |
aagatctatattg-gttattattactgtcatggttgggaattatatacatgtgttccgcaagaatgt |
16102103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 611 - 666
Target Start/End: Original strand, 16102232 - 16102288
Alignment:
| Q |
611 |
tgtttgtatttggtgttctgtctatatgcggcacct-attgtttgtattgatgatgt |
666 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
16102232 |
tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt |
16102288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 435 - 533
Target Start/End: Complemental strand, 12210486 - 12210388
Alignment:
| Q |
435 |
ttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
12210486 |
ttgtgagtactgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttatt |
12210388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 12210650 - 12210488
Alignment:
| Q |
122 |
caattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaag |
221 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||| | |||| |
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|
| T |
12210650 |
caattttgaattttgtaagtaatagtggttctacaaatggtttttttgttgaattttgattcagttcaggtgctacatatcaacaaagaaaattggaaag |
12210551 |
T |
|
| Q |
222 |
aagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgt |
288 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
12210550 |
aagagctatattg----gttattactatcatggttgggaattatatacatgtgttccgcaagaatgt |
12210488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 611 - 666
Target Start/End: Complemental strand, 12210359 - 12210303
Alignment:
| Q |
611 |
tgtttgtatttggtgttctgtctatatgcggcacct-attgtttgtattgatgatgt |
666 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
12210359 |
tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt |
12210303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 435 - 533
Target Start/End: Complemental strand, 17618625 - 17618527
Alignment:
| Q |
435 |
ttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt |
533 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
17618625 |
ttgtgagtattgggagctggtcttgaagcaattttatgctcggctgggtttggaggatttcgcaaggccattgttgtttttggtttcggctaccttatt |
17618527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 17618791 - 17618627
Alignment:
| Q |
122 |
caattctgaattttagaagcaatagtggttctacaaatgannnnnnngttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaag |
221 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| |||||||||| ||| | | | ||||||||||||||||||||||||| | |||| |
|
|
| T |
17618791 |
caattctgaattttgtaagtaatagtggttctacaaatg-gttttttgttgaatttttattcagtacaggtgctacatatcaacaaagaaaattggaaag |
17618693 |
T |
|
| Q |
222 |
aagagctatattgagttattattactgtcatggttggaaattgtatacatgtgttccgcaagaatgt |
288 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
17618692 |
aatagttatattg-gttattattactgtcatggttgggaattatatacatgtgttccgcaagaatgt |
17618627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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