View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_10 (Length: 428)
Name: NF4627_low_10
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_10 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 32465495 - 32465076
Alignment:
| Q |
16 |
attatactctctcactctctccctcttcatctcaaaaatgcataaatcattaatgggaa-------gcatgttgcatgattaaatgcgacttggaagtag |
108 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32465495 |
attatactctctcattctctccctcttcatctcaaaaatgcataaatcattaatgggaattgggaagcatgttgcatgattaaatgcgacttggaagtag |
32465396 |
T |
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| Q |
109 |
tagtggtggtagtattggcaaggaccccatagccctagcaaccctcctaagcacatgtttttgaatctttccggttgaagtctttggcaactcttcctta |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
32465395 |
tagtggtggtagtattggcaaggaccccatagccctagcaacccttctaagcacatgtttttgaatctttccagttgaagtctttggcaactcctcctta |
32465296 |
T |
|
| Q |
209 |
aacacaaccgtcttaggcaccataaaatgtggcaacttctctctacaaaactctttaacctccttctccgtcggtatctcctcttccttcaactcgtcat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465295 |
aacacaaccgtcttaggcaccataaaatgtggcaacttctctctacaaaactccttaacctccttctccgtcggtatctcctcttccttcaactcgtcat |
32465196 |
T |
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| Q |
309 |
tcaaactcacaaacgcacacggcgtctctccccaaaactcatctggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctc |
408 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465195 |
tcaaactcacaaatgcacacggcgtctcgccccaaaactcatccggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctc |
32465096 |
T |
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| Q |
409 |
aacctccacactactcatat |
428 |
Q |
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| T |
32465095 |
aacctccacactactcatat |
32465076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 144 - 428
Target Start/End: Original strand, 32455775 - 32456059
Alignment:
| Q |
144 |
tagcaaccctcctaagcacatgtttttgaatctttccggttgaagtctttggcaactcttccttaaacacaaccgtcttaggcaccataaaatgtggcaa |
243 |
Q |
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|||||||| | ||||||||||||||||||| |||||||||||| ||||||||||| || | | ||||||||| || ||||||| ||||||||| ||||| |
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| T |
32455775 |
tagcaacctttctaagcacatgtttttgaacctttccggttgatgtctttggcaattccttcataaacacaattgttttaggcatcataaaatgcggcaa |
32455874 |
T |
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| Q |
244 |
cttctctctacaaaactctttaacctccttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaacgcacacggcgtctctccccaa |
343 |
Q |
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| T |
32455875 |
cttctctttacaaaactccttaatctcattatcagtcggaatatcattcttcttcaattcatctttcaaactcacaaacccacacggcgtctccccccaa |
32455974 |
T |
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| Q |
344 |
aactcatctggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatat |
428 |
Q |
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| T |
32455975 |
aaatcatctggtctcgccaccaccgccgcctccttaaccgccgaatgcatatacaaaaccccctcaacctccacactactcatat |
32456059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 170 - 425
Target Start/End: Original strand, 32471537 - 32471792
Alignment:
| Q |
170 |
tgaatctttccggttgaagtctttggcaactcttccttaaacacaaccgtcttaggcaccataaaatgtggcaacttctctctacaaaactctttaacct |
269 |
Q |
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||||| || ||||| ||||||||||| | ||| || |||||||| ||||| || || |||||| |||| ||||| |||| ||||| |||| | || |
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| T |
32471537 |
tgaattttcccggtagaagtctttggaagctcatctttaaacaccaccgtttttggaaccatataatgcggcaaattcttcctacagtactcaactatct |
32471636 |
T |
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| Q |
270 |
ccttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaacgcacacggcgtctctccccaaaactcatctggcctcgccaccaccgc |
369 |
Q |
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| T |
32471637 |
ctttctccgttggtatatccctttccttcaacccttctttcaaactcacaaaagcacacggtgtctccccccaaaactcatcctccctcgccaccaccgc |
32471736 |
T |
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| Q |
370 |
cgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactca |
425 |
Q |
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|||||| || ||||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
32471737 |
cgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactca |
32471792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 144 - 428
Target Start/End: Complemental strand, 24790 - 24506
Alignment:
| Q |
144 |
tagcaaccctcctaagcacatgtttttgaatctttccggttgaagtctttggcaactcttccttaaacacaaccgtcttaggcaccataaaatgtggcaa |
243 |
Q |
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|||||||| | |||||||||||||||| || |||||||||||||||||||||||| || | | | | ||||| || |||||| ||||||||||||||| |
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| T |
24790 |
tagcaacctttctaagcacatgttttttaacctttccggttgaagtctttggcaattccttcatgatcacaattgttttaggcgtcataaaatgtggcaa |
24691 |
T |
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| Q |
244 |
cttctctctacaaaactctttaacctccttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaacgcacacggcgtctctccccaa |
343 |
Q |
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|| ||| |||||||||| |||| |||| | || || || || || | ||| ||||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
24690 |
ctcctccctacaaaacttcttaatctccatgtcagttggaatatcgttttcattcaattcatccttcaaactcacaaacgcacacggcgtctctccccaa |
24591 |
T |
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| Q |
344 |
aactcatctggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatat |
428 |
Q |
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|| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||| |
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| T |
24590 |
aaatcatccggcctagccaccaccgccgcctccttaaccgcgggatgcatgtacaaaacaccctcaacttccacactactcatat |
24506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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