View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_16 (Length: 345)
Name: NF4627_low_16
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 26493576 - 26493266
Alignment:
| Q |
18 |
caattcaccattacaagcattaattttatgatattcaccgcttgtgacaggcactttggccaacaaggggatataccatacaatagaaaacttctacaaa |
117 |
Q |
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| T |
26493576 |
caattcaccattacaagcattaattttaagatattcactgcttgtgacaggcactttggccaacaaggggatataccatacaatagaaaacttctacaaa |
26493477 |
T |
|
| Q |
118 |
catcaaattctgctaagagttttgatcacaaagagaatccttcaccttcatcatcaccaacaccttcaccagtttctccatcagaaagtccctcaaattc |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26493476 |
catcaaattctgccaagagttttgatcacaaagagaatccttcaccttcatcatcaccaacaccttcaccagtttctccatcagaaagtccctcaaattc |
26493377 |
T |
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| Q |
218 |
accatcaccatcattttttcttccatcactattaacatcaccagaactttctccttcaccatcatcctcaccttcaccttcacctttacctgtgatatca |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26493376 |
acc------atcattttttcttccatcactattaacatcaccagaactttccccttcaccatcatcctcaccttcaccttc------acctgtgatatca |
26493289 |
T |
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| Q |
318 |
ccttcccctacagtattatctac |
340 |
Q |
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|||||||||||||| ||||||| |
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| T |
26493288 |
ccttcccctacagttctatctac |
26493266 |
T |
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