View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_18 (Length: 337)
Name: NF4627_low_18
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 40115284 - 40115602
Alignment:
| Q |
1 |
cggatgtccaagaatatgatgccaaggtggattagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgc |
100 |
Q |
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| T |
40115284 |
cggatgtcctaaaatatgatgccaaggtggagtagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgc |
40115383 |
T |
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| Q |
101 |
aatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataaatgtgaga |
200 |
Q |
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| T |
40115384 |
aatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataaatgtgaga |
40115483 |
T |
|
| Q |
201 |
cagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaat |
300 |
Q |
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| T |
40115484 |
cagacaataacttgcaagtgatatttggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaat |
40115583 |
T |
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| Q |
301 |
gggaagtccagtaccatca |
319 |
Q |
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| T |
40115584 |
gggaagtccagtaccatca |
40115602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
96 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
185 |
Q |
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| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 42360930 - 42361002
Alignment:
| Q |
82 |
gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
154 |
Q |
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| T |
42360930 |
gtagagcccatccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 3017270 - 3017100
Alignment:
| Q |
82 |
gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggtta |
181 |
Q |
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| T |
3017270 |
gtagagcccatccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatcatgaaagaattcaatagaaattgggtta |
3017171 |
T |
|
| Q |
182 |
gttttgcataaatgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtg |
252 |
Q |
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| T |
3017170 |
gtcttgcataagttggagacagataataatttgcaagaaatatgagggacatgaaggactttgggaaggtg |
3017100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
120 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
155 |
Q |
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| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 3703285 - 3703363
Alignment:
| Q |
77 |
atgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcag |
155 |
Q |
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||||||||||| |||| |||||| |||| |||||| ||| ||||||||||||||||||| | ||||||| |||||| |
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| T |
3703285 |
atgtggtagagtccattgttatgccgtcctcttagaatgggcacccttgtcttcaaatccttaatcaaaaaacaatcag |
3703363 |
T |
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