View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_19 (Length: 323)
Name: NF4627_low_19
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 2494301 - 2494587
Alignment:
| Q |
16 |
caatttcattacaaaactcatgaacaaattcatcatcttttttctgcatcttccacccaactttctcagcaaatttcagcatcttatctttctgatcttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2494301 |
caatttcattacaaaactcatgaacaaattcatcatcttttttctgcatcttccacccaactttctcagcaaatttcagcatcttatccttctgatcttg |
2494400 |
T |
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| Q |
116 |
tgtaaactttgtcctgaaacgctttctagaattgttagagtgagaattcatcaacatagtttggtttggagctgcaacgttttccggtaaggcggcggag |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494401 |
tgtaaactttgtcctgaaacgctttcttgaattgttagagtgagaattcatcaacatggtttggtttggagctgcaacgttttccggtaaggcggcggag |
2494500 |
T |
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| Q |
216 |
agagcaagaagcatgtgaggggcggaggggtagtaggaagatgagatcggtggtggtgaagaggaatttgggctccggtgagagaac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494501 |
agagcaagaagcatgtgaggggcggaggggtagtaggaagatgagatcggtggtggtgaagaggaatttgggctccggtgagagaac |
2494587 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 3683599 - 3683641
Alignment:
| Q |
48 |
tcatcttttttctgcatcttccacccaactttctcagcaaatt |
90 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||||| |
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| T |
3683599 |
tcatctctcttctgcatcttccacccaactttatcagcaaatt |
3683641 |
T |
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