View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_2 (Length: 562)
Name: NF4627_low_2
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 30526744 - 30526211
Alignment:
| Q |
19 |
cttagatatattgatgcttgttttgtggggattgtgaaaatctactccctaagatattgctttgacacaaatggtatcgaaattgacaagcattttctta |
118 |
Q |
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| T |
30526744 |
cttagatatatttatgcttgttttgtggggattgtgaaaatctactccctaagatattgctttgacacaaatggtaccgaaattgacaagcattttctta |
30526645 |
T |
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| Q |
119 |
aagactagctagcctagtctacaacagattttcttcaaattctaaaatctaagtattgcattttttattttctaaaatcactcctttcttgtgcactgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526644 |
aagactagctagcctagtctacaacagatttttttcaaattctaaaatctaagtattgcattttttattttctaaaatcactcctttcttgtgcactgtt |
30526545 |
T |
|
| Q |
219 |
ctttttaaaacaaagtattttgtgacatacgtacgataattttaaccgtaaggtagataacaaagatcacttttttcatacaaacttttgtttcttgcgg |
318 |
Q |
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| T |
30526544 |
ctttttaaaacaaagtattttgtgacatacgtacgataattttaaccgtaaggtagataacaaagatcacttttttcatacaaacttttgtttcttgcgg |
30526445 |
T |
|
| Q |
319 |
gccaatgttagtactttctttaattcctacaaggagcttttgaaaatctgtctttttgctcccttcaccatctaaattcaccaataattcaaagagctaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526444 |
gccaatgttagtactttctttaattcctacaaggagcttttgaaaatctgtctttttgctcccttcaccatctaaattcaccaataattcaaagagctaa |
30526345 |
T |
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| Q |
419 |
ggaaagacaataatccctacactgatcacttctcctatatatatcttaattaaattcccaattcactaatgctcatataattcttggattatgaccttcc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526344 |
ggaaagacaataatccctacactgatcacttctcctatatatatcttaattaaattcccaattcactaatgctcatataattcttggattatgaccttcc |
30526245 |
T |
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| Q |
519 |
taccagacacaaaaaagattgatagtgacctttg |
552 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30526244 |
taccagacacaaaaaagattgatagtgacctttg |
30526211 |
T |
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