View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627_low_20 (Length: 315)

Name: NF4627_low_20
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627_low_20
NF4627_low_20
[»] chr3 (1 HSPs)
chr3 (19-315)||(47839862-47840160)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 47839862 - 47840160
Alignment:
Q  19 atatcagatttcctcgtttgtgttgtgttgtaaatgacaaatctatttccatggcagataaatgatcatggcaggttggtggttgtgtattttcttggag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  47839862 atatcagatttcctcgtttgtgttgtgttgtaaatgacaaatctatttccatggcagataaatggtcatggcaggttggtagttgtgtattttcttggag 47839961  T
Q  119 cttgaacaacattttgaataacgtttgacagtgtggaaactgctgtttt--gagaagtctggtacggaaggttcgtccgtgggtcgaagaggcagattct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47839962 cttgaacaacattttgaataacgtttgacagtgtggaaactgctgttttttgagaagtctggtacggaaggttcgtccgtgggtcgaagaggcagattct 47840061  T
Q  217 tttgtttggctacctgaatcgatgaagtgttttactgtgaaaagctgctagatgctgttgtctaatttccggacagttgaggacacggacggtgacttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47840062 tttgtttggctacctgaatcgatgaagtgttttactgtgaaaagctgctagatgctgttgtctaatttccggacagttgaggacatggacggtgacttt 47840160  T

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