View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_26 (Length: 256)
Name: NF4627_low_26
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 31732791 - 31733034
Alignment:
| Q |
1 |
agtcacctttccactaagaataatatataagtgaaggacggtttatactttataatgaaaggctggaagaattagtaaagaaatttnnnnnnnttatgta |
100 |
Q |
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| T |
31732791 |
agtcacctttccactaagaata---tataagtgaaggacggtttatactttataatgaaaggctggaagaattagtaaagaaatttaaaaaaattatgta |
31732887 |
T |
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| Q |
101 |
gggacttatataaagctattggacaaaatacattccatgttccaatcacaaaaaagaaatgcaacaaagagaatgaggagatatggatagaaagaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31732888 |
gggacttatataaagctattggacaaaatacattccatgttccaatcacaaaaaagaaatgcaacaaagagaatgaggagatatggatagaaagaatcaa |
31732987 |
T |
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| Q |
201 |
caaatcatcgtgcatgaaagcaacaacactatcactactagaataat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31732988 |
caaatcatcgtgcatgaaagcaacaacactatcactactagaataat |
31733034 |
T |
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