View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_3 (Length: 503)
Name: NF4627_low_3
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 23 - 493
Target Start/End: Complemental strand, 41713644 - 41713174
Alignment:
| Q |
23 |
ttaaggacccacttgtgcgaattcaggaccattggcatttccattttctgaaaaagaacctctaggtgatgacccttcctcagaaccttctgggactgga |
122 |
Q |
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| T |
41713644 |
ttaaggacccacttgtgcgaattcaggaccattggcatttccattttctgaaaaagaacctctaggtgatgacccttcctcagaaccttctgggactgga |
41713545 |
T |
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| Q |
123 |
gatggtggttgcggcggagagacatacaccactctcaatttgcactcctcgaccacatgccctgcctccttgttgaactaagcaatcccgaatggcacaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41713544 |
gatggtggttgcggcggagagacatacaccactctcaatttgcactcctcgaccacatgccctgcctccttgttgaactaagcaatcccgaatggcacaa |
41713445 |
T |
|
| Q |
223 |
atcttgtaacttaacacatcataatcgtaaacaaaaatcaaatgaaaattcaacagcaactagcatgataatcataccatctccgcggagatatcttttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41713444 |
atcttgtaacttaacacatcataatcgtaaacaaaaatcaaatgaaaactcaacagcaactagcatgataatcataccatctccgcagagatatcttttg |
41713345 |
T |
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| Q |
323 |
gactgacaccatcgttggtttttacgctctgaagaagaaacttatccttgcattgcatatcggctggagcttctttttgcgcttgcatggtaactataca |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41713344 |
gactgacaccatcgttggtttttacgctctgaagaagaaacttatccttgcattgcatatcggctggagcttctttttgcgcttgcatggtaactataca |
41713245 |
T |
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| Q |
423 |
aaaacagacaaacacacttatatcgattaacatttaaacacaagtgaaaagaaacgatgcattcagaataa |
493 |
Q |
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| T |
41713244 |
aaaacagagaaacacacttatatcgattaacatttaaacacaagtgaaaagaaacgatgcattcagaataa |
41713174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 9308630 - 9308736
Alignment:
| Q |
63 |
ccattttctgaaaaagaacctctaggtgatgacccttcctcagaaccttctgggactggagatggtggttgcggcggagagacatacaccactctcaatt |
162 |
Q |
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||||||||||| | ||| ||| ||| ||||| |||| ||||| |||||| | ||||| ||||||||||| || |||| ||||| || |||||||||| |
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| T |
9308630 |
ccattttctgatacagatgctcgaggagatgattcttcatcagatccttctcgaactggggatggtggttgaggaggagcaacataaacaactctcaatt |
9308729 |
T |
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| Q |
163 |
tgcactc |
169 |
Q |
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||||||| |
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| T |
9308730 |
tgcactc |
9308736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 3719713 - 3719870
Alignment:
| Q |
45 |
tcaggaccattggcatttccattttctgaaaaagaacctctaggtgatgacccttcctcagaaccttctgggactggagatggtggttgcggcggagaga |
144 |
Q |
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|||| ||||||||||||||||||||| | || |||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||| || |||| || |
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| T |
3719713 |
tcagaaccattggcatttccattttcagtaacagaacctctaggtgatgatccttcctcagaactttctgggactggagattgaggttgaggtggagcga |
3719812 |
T |
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| Q |
145 |
catacaccactctcaatttgcactcctcgaccacatgccctgcctccttgttgaacta |
202 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
3719813 |
catataccactctcaatttgcactcctcaaccacatgccctgcttccttgttaaacta |
3719870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 3720041 - 3720109
Alignment:
| Q |
352 |
tgaagaagaaacttatccttgcattgcatatcggctggagcttctttttgcgcttgcatggtaactata |
420 |
Q |
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|||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||| ||||||||| |
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| T |
3720041 |
tgaagaagaaacttatccttgcattgcatatcagggggaacttccttttgcgcttgcatagtaactata |
3720109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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