View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_low_4 (Length: 484)
Name: NF4627_low_4
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Original strand, 36682495 - 36682952
Alignment:
| Q |
16 |
tcagcaaacaccttaaagcaatggcacacaaaggggtgaatatcaatgtata----cgtatcatgtgccatgtcactaagctagttgttgacatggcaca |
111 |
Q |
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| T |
36682495 |
tcagcaaacaccttaaagcaatggcacacaaaggggtgtatatcaatgtatatatacgtatcatgtgccatgtcactaagctagttgttgacatggcaca |
36682594 |
T |
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| Q |
112 |
caactgtctagttagttacacagttgtcaagttagttagaggacttggtgactaggcaaagtttgtttgactcaaactattaggttattaatagtatata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36682595 |
caactgtctagttagttacacagttgtcaagttagttagaggacttggtgactaggcaaagtttgtttgactcaaactattaggttattaatag----ta |
36682690 |
T |
|
| Q |
212 |
tggcctgctatataaagcaatctcattgtaatcat--ttattatttaactcccctnnnnnnnnnnnnnnnctaattctaatagattgatcattgaataat |
309 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36682691 |
tggcctgctatataaagcaatctcattgtaatcataattattatttaactcccctaaaaataaaaataaactaattctaatagattgatcattgaataat |
36682790 |
T |
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| Q |
310 |
gaacttcaacaatgtgtctgaaattactttttactctaccctgaaactacacatgtaggttatttaacaatcaaaagggattcacatttaagtttgtaaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682791 |
gaacttcaacaatgtgtctgaaattactttttactctaccctgaaactacacatgtaggttatttaacaatcaaaagggattcacatttaagtttgtaaa |
36682890 |
T |
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| Q |
410 |
aattgaagaggaaaactattcaagacataaacataccagaactcatgcaaaataaaccagaataat |
475 |
Q |
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| T |
36682891 |
aattgaagaggaaaactattgaagacataa----accagaactcatgcaaaataaatcagaataat |
36682952 |
T |
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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 40555403 - 40555479
Alignment:
| Q |
56 |
tatcaatgtatacgtatcatgtgccatgtcactaagctagttgttgacatggcacacaactgtctagttagttacac |
132 |
Q |
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||||||| |||| |||||||||| ||||||||||||||||||| |||||||||| ||| ||| | |||||||||||| |
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| T |
40555403 |
tatcaatatatatgtatcatgtgtcatgtcactaagctagttgctgacatggcatacagctgccaagttagttacac |
40555479 |
T |
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