View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627_low_7 (Length: 431)

Name: NF4627_low_7
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627_low_7
NF4627_low_7
[»] chr2 (4 HSPs)
chr2 (10-324)||(12324770-12325084)
chr2 (90-309)||(33789880-33790095)
chr2 (126-231)||(18955399-18955505)
chr2 (12-73)||(33789818-33789879)
[»] scaffold0026 (2 HSPs)
scaffold0026 (12-309)||(80636-80930)
scaffold0026 (12-302)||(79440-79727)
[»] chr1 (17 HSPs)
chr1 (12-310)||(8788532-8788827)
chr1 (90-335)||(10582701-10582939)
chr1 (91-335)||(49122130-49122367)
chr1 (90-309)||(8089719-8089931)
chr1 (90-311)||(10583907-10584121)
chr1 (91-262)||(49121941-49122108)
chr1 (90-310)||(49123263-49123476)
chr1 (100-261)||(23541015-23541176)
chr1 (188-309)||(3815217-3815336)
chr1 (188-253)||(36346593-36346658)
chr1 (12-79)||(49121878-49121945)
chr1 (12-73)||(8089932-8089993)
chr1 (12-73)||(10582639-10582700)
chr1 (12-73)||(10583845-10583906)
chr1 (188-253)||(19950390-19950455)
chr1 (12-73)||(49123201-49123262)
chr1 (194-242)||(17826223-17826271)
[»] chr3 (13 HSPs)
chr3 (12-302)||(592420-592707)
chr3 (12-309)||(48637538-48637832)
chr3 (12-309)||(40976701-40977002)
chr3 (12-309)||(7197651-7197929)
chr3 (12-309)||(54994548-54994822)
chr3 (129-309)||(45826152-45826329)
chr3 (74-309)||(2386292-2386528)
chr3 (143-262)||(51274436-51274555)
chr3 (15-72)||(45826357-45826414)
chr3 (12-55)||(2386531-2386574)
chr3 (187-246)||(8638949-8639008)
chr3 (210-253)||(42510646-42510688)
chr3 (194-253)||(49987229-49987286)
[»] chr5 (12 HSPs)
chr5 (44-311)||(41050923-41051190)
chr5 (90-334)||(39702793-39703034)
chr5 (90-309)||(39701588-39701804)
chr5 (90-335)||(29527225-29527464)
chr5 (90-309)||(22950264-22950476)
chr5 (92-310)||(19934559-19934770)
chr5 (90-309)||(29526038-29526251)
chr5 (196-309)||(19139374-19139484)
chr5 (188-248)||(35144558-35144618)
chr5 (12-73)||(19934495-19934556)
chr5 (12-73)||(22950202-22950263)
chr5 (41-73)||(39701805-39701837)
[»] chr8 (5 HSPs)
chr8 (12-310)||(40254325-40254617)
chr8 (20-309)||(2411061-2411340)
chr8 (194-302)||(21661182-21661287)
chr8 (187-253)||(5176600-5176665)
chr8 (231-309)||(26246968-26247043)
[»] scaffold0227 (4 HSPs)
scaffold0227 (90-334)||(11073-11314)
scaffold0227 (132-309)||(12263-12437)
scaffold0227 (12-79)||(12164-12231)
scaffold0227 (20-73)||(11020-11072)
[»] chr4 (7 HSPs)
chr4 (12-221)||(45638746-45638960)
chr4 (90-310)||(11962031-11962244)
chr4 (180-309)||(3567053-3567179)
chr4 (186-255)||(27869367-27869436)
chr4 (12-73)||(11961969-11962030)
chr4 (194-253)||(32992387-32992445)
chr4 (220-253)||(54291698-54291731)
[»] chr7 (6 HSPs)
chr7 (90-335)||(6081202-6081440)
chr7 (90-309)||(6082409-6082621)
chr7 (188-309)||(17901154-17901274)
chr7 (12-73)||(6081140-6081201)
chr7 (12-73)||(6082347-6082408)
chr7 (192-306)||(27021363-27021472)
[»] chr6 (12 HSPs)
chr6 (90-331)||(18132967-18133200)
chr6 (90-309)||(21535709-21535921)
chr6 (90-309)||(18131782-18131994)
chr6 (129-309)||(21395591-21395768)
chr6 (200-307)||(7033339-7033443)
chr6 (188-309)||(4303035-4303153)
chr6 (91-177)||(7033443-7033525)
chr6 (199-309)||(16189671-16189780)
chr6 (17-79)||(7033521-7033583)
chr6 (12-73)||(18131995-18132056)
chr6 (12-73)||(18133201-18133262)
chr6 (12-73)||(21535647-21535708)
[»] scaffold0011 (3 HSPs)
scaffold0011 (90-309)||(205589-205801)
scaffold0011 (129-309)||(211666-211843)
scaffold0011 (12-73)||(205802-205863)
[»] scaffold0018 (2 HSPs)
scaffold0018 (90-262)||(177907-178075)
scaffold0018 (12-73)||(178076-178137)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 12324770 - 12325084
Alignment:
Q  10 ataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| | ||    
T  12324770 ataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtggttgtctactaaacttatgtg 12324869  T
Q  110 taactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactt 209  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||     
T  12324870 taactactataggagagagttagtattataaataagatgcaaaggaaaagaaagctattcagggattgcgataaaggattggtagggagagaccaaactc 12324969  T
Q  210 tcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12324970 tcgaatttttggaggggagagaaccaagactctcgaattccttgggattatatattgtaataattactataaatttatattttgatatcagtttctatca 12325069  T
Q  310 accggtatcagagca 324  Q
    |||||||||||||||    
T  12325070 accggtatcagagca 12325084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 33789880 - 33790095
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||     
T  33789880 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggata 33789975  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  33789976 ggtagggagagaccaagctctcaaattcttggaggggagagaaccaagactctcgaatttcttgggattatatattgtaataattactataaatttatat 33790075  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||||||||||    
T  33790076 tttgatatcagtttctatca 33790095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 18955399 - 18955505
Alignment:
Q  126 gagttagtattataaataa-gatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggagg 224  Q
    |||||||| |||||||||| |||||| || |||||||  | |||| |  |||  |||||| |||||||||||||||||||| || || |||||||||| |    
T  18955399 gagttagtgttataaataaagatgcagaggaaaagaagagaattcggttatttggataaaggattggtagggagagaccaatctctctaattcttggaag 18955498  T
Q  225 ggagaga 231  Q
    |||||||    
T  18955499 ggagaga 18955505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 33789818 - 33789879
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  33789818 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 33789879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 80636 - 80930
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||    
T  80636 aatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgttgtctgcagtagtgcctgtctactaaactaatatgta 80735  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||||||||||| || ||    
T  80736 actgctataggagtgagttagtattataaataagatgcagagaaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctc 80835  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    |||||||||||||||||||||||||||||||||||||  ||| |||  ||||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  80836 gaattcttggaggggagagaaccaagactctcgaatttattgggat--tatattgtaat-attactattagtttatattttgatatcagttcctatca 80930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 79440 - 79727
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||    
T  79440 aatactagtattttatttaatagtattataaattagtaactgttacttatgtgcagtaattgctgtctgcagtagtgcctgtctactaaactaatatgta 79539  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| || || ||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||  |||||| ||| |||| ||||||||||| || ||    
T  79540 actgctgtaggagtgagttagtattataaataagatgcagaggaaaataaaggtattcatggattaggataaaggataggtacggagagaccaagctctc 79639  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtt 302  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||| |||||||| | ||||||||||||| ||||||    
T  79640 gaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-attactattagtttatattttgatatcagtt 79727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 8788827 - 8788532
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||||    
T  8788827 aatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgctgtctgcagtagtgtttgtctactaaactaatatgta 8788728  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| ||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||| |||||||||||||||| |||||    
T  8788727 actgctataggagtgagttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctttc 8788628  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatcaa 310  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||  ||||||||||| |||||||| | ||||||||||||| |||||| |||||||    
T  8788627 gaattcttggaggggagagaaccaagactctctaatttcttgggat--tatattgtaat-attactattagtttatattttgatatcagttcctatcaa 8788532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 90 - 335
Target Start/End: Original strand, 10582701 - 10582939
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| ||||    
T  10582701 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggatt 10582796  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |||||||    
T  10582797 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatat 10582893  T
Q  290 tttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 335  Q
    |||||| |||||| |||||||| |||||||||||| ||||||||||    
T  10582894 tttgatatcagttcctatcaactggtatcagagcagttctgatcca 10582939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 91 - 335
Target Start/End: Original strand, 49122130 - 49122367
Alignment:
Q  91 tgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattg 190  Q
    ||||| |||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||    
T  49122130 tgtctgctaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattg 49122225  T
Q  191 gtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatatt 290  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||    
T  49122226 gtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatatt 49122322  T
Q  291 ttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 335  Q
    || || |||||| |||||||| |||||||||||| ||||||||||    
T  49122323 ttcatatcagttcctatcaactggtatcagagcagttctgatcca 49122367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 90 - 309
Target Start/End: Complemental strand, 8089931 - 8089719
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| ||||    
T  8089931 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggatt 8089836  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  8089835 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 8089739  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  8089738 tttgatatcagttcctatca 8089719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 90 - 311
Target Start/End: Original strand, 10583907 - 10584121
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||    | || |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| ||||    
T  10583907 ctgtctactaaacttctatgtaacagctat----gggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggatt 10584002  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |||||||    
T  10584003 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatat 10584099  T
Q  290 tttgatgtcagtttctatcaac 311  Q
    |||||| |||||| ||||||||    
T  10584100 tttgatatcagttcctatcaac 10584121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 262
Target Start/End: Original strand, 49121941 - 49122108
Alignment:
Q  91 tgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattg 190  Q
    |||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||    
T  49121941 tgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattg 49122036  T
Q  191 gtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatat 262  Q
    ||||||||||| ||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||    
T  49122037 gtagggagagatcaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggattatat 49122108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 90 - 310
Target Start/End: Original strand, 49123263 - 49123476
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| | |||| ||||    
T  49123263 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattggggtaaaggatt 49123358  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    ||||||||||||     |  |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||| ||||  ||||||| | |||||||    
T  49123359 ggtagggagagattgggcactcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattctaat-cttactattagtttatat 49123455  T
Q  290 tttgatgtcagtttctatcaa 310  Q
    |||||| |||||| |||||||    
T  49123456 tttgatatcagttcctatcaa 49123476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 23541176 - 23541015
Alignment:
Q  100 aacttctatgtaactactatatgagagagttagtattataaataa-gatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggag 198  Q
    ||||||||||||||| ||||| |   ||||||||||||| ||||| ||||||||| ||||||| |  |||||||||||| |||||  |||||||||||||    
T  23541176 aacttctatgtaactgctatagg---gagttagtattatgaataaagatgcaaaggaaaagaaggacattcagggattgggataatggattggtagggag 23541080  T
Q  199 agaccaaactttcg--aattcttggaggggagagaaccaagactctcgaattccttgagattata 261  Q
    ||||||| || | |  ||| |||||| || ||| |||||||||||| ||||| |||| |||||||    
T  23541079 agaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattata 23541015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 3815217 - 3815336
Alignment:
Q  188 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttat 287  Q
    |||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| | || ||  || |||||| || |||| ||| ||||| |    
T  3815217 ttggaagggagagaccaagcactcgaattcttggaggggagagaaccaagactctcgaatttcatggga-aatctattgt-attattaatattaatttgt 3815314  T
Q  288 attttgatgtcagtttctatca 309  Q
    |||||||| |||||||||||||    
T  3815315 attttgatatcagtttctatca 3815336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 36346658 - 36346593
Alignment:
Q  188 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 253  Q
    |||| ||||||||| ||| || |||||||| |||||||||||||||||||||||||||||| ||||    
T  36346658 ttggaagggagagatcaagctctcgaattcatggaggggagagaaccaagactctcgaatttcttg 36346593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 49121878 - 49121945
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtct 79  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||    
T  49121878 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgaagtaattgttgtct 49121945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 8089993 - 8089932
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  8089993 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 8089932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 10582639 - 10582700
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  10582639 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 10582700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 10583845 - 10583906
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  10583845 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 10583906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 19950455 - 19950390
Alignment:
Q  188 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 253  Q
    |||| ||||| | ||||| || |||||||||||||||||||||||||||| ||||| |||| ||||    
T  19950455 ttgggagggaaaaaccaagctctcgaattcttggaggggagagaaccaaggctctcaaatttcttg 19950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 49123201 - 49123262
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  49123201 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 49123262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 17826271 - 17826223
Alignment:
Q  194 gggagagaccaaactttcgaattcttggaggggagagaaccaagactct 242  Q
    |||||||||||| || ||||||||||||||||  |||| ||||||||||    
T  17826271 gggagagaccaagctctcgaattcttggagggaggagacccaagactct 17826223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 592420 - 592707
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||    
T  592420 aatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgctgtctgcagtagtgcctgtctactaaactaatatgta 592519  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||| || ||    
T  592520 actgctataggagtgagttagtattataaataagatgcaaaggaaaagaaaggtattcagggattgggataaaggattggtagggagagcccaagctctc 592619  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtt 302  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| ||||||    
T  592620 gaattcttggaggggagagaaccaagaccctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatcagtt 592707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 48637832 - 48637538
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||    
T  48637832 aatactagttgtttatttaatagtattataaattagtaactattacttatgtgcagtaattgctgtctgcagtagtgcctgtctactaaactaatatgta 48637733  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| ||||| ||| ||||||||||||||||||||||||| || |||||| ||||||| |||||||| |||||| |||||||||||||||||||| || ||    
T  48637732 actgctataggagtgagttagtattataaataagatgcagaggaaaagagaggtattgagggattgggataaaggattggtagggagagaccaagctctc 48637633  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    |||| ||||||||||||||||||||||||||| |||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  48637632 gaatacttggaggggagagaaccaagactctcaaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatcagttcctatca 48637538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 40976701 - 40977002
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  ||| |||||||||||| |||||    
T  40976701 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgctggctgcagtagttgctggctactaaacttcaatgta 40976800  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattgg-------tagggagagacca 204  Q
    ||| ||||| ||| || ||||| |||||||||||||||| || |||||||||| || ||||||||| |||||| || |||       || ||||||||||    
T  40976801 actgctataggagggaattagtcttataaataagatgcagaggaaaagaaaggcatgcagggattgggataaaggactggtatggactatggagagacca 40976900  T
Q  205 aactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttc 304  Q
    | || |||||||||||||||||||||||||||||||||||||||  ||| |||  ||||||||||| |||||||| | ||||||||||||| |||||| |    
T  40976901 agctctcgaattcttggaggggagagaaccaagactctcgaattttttgggat--tatattgtaat-attactattagtttatattttgatatcagttcc 40976997  T
Q  305 tatca 309  Q
    |||||    
T  40976998 tatca 40977002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 7197651 - 7197929
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    |||| |||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||                |||||||| |||||||||||||    
T  7197651 aataatagtagtttatttaataatattataaattagttactgttacttatgtgcagtaattg----------------ctgtctacaaaacttctatgta 7197734  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| ||| | ||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| |||||||||||||||||||| || ||    
T  7197735 actgctacaggagagagttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattggtagggagagaccaagctctc 7197834  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  7197835 gaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatcagttcctatca 7197929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 54994548 - 54994822
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    |||| |||| |||||||||||| |||||||||| ||||| ||||||||||||| ||||||||                ||||||||||||||||||||||    
T  54994548 aataatagtagtttatttaataatattataaataagtaactgttacttatgtgtagtaattg----------------ctgtctactaaacttctatgta 54994631  T
Q  112 actactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttc 211  Q
    ||| ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||    
T  54994632 actgctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattggtagggagagaccaagctctc 54994727  T
Q  212 gaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  54994728 gaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatcagttcctatca 54994822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 129 - 309
Target Start/End: Complemental strand, 45826329 - 45826152
Alignment:
Q  129 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 228  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||| |||||||||||||||| || |||||||||||||||||||    
T  45826329 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 45826230  T
Q  229 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    ||||||||||||||| |||| |||| |||  ||||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  45826229 agaaccaagactctctaatttcttgggat--tatattgtaat-attactattagtttatattttgatatcagttcctatca 45826152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 74 - 309
Target Start/End: Complemental strand, 2386528 - 2386292
Alignment:
Q  74 ttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcaggg 173  Q
    |||||||||||| |  ||||||||||||||| |||||||||  |||| ||     |||||||||||||||||||||| || |||||||||| ||||||||    
T  2386528 ttgtctgcagtaattgctgtctactaaacttttatgtaactgttataggac----ttagtattataaataagatgcagaggaaaagaaaggcattcaggg 2386433  T
Q  174 attgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaata-- 271  Q
    |||| |||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||| |||  ||||||||||||      
T  2386432 attgagataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccgagactctcgaatttcttgggat--tatattgtaatatt 2386335  T
Q  272 -----attactataaatttatattttgatgtcagtttctatca 309  Q
         |||||||| | ||||||||||||| |||||||||||||    
T  2386334 agtatattactattagtttatattttgatatcagtttctatca 2386292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 262
Target Start/End: Original strand, 51274436 - 51274555
Alignment:
Q  143 aagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactct 242  Q
    |||||||| || ||||||| || |||||||||||| |||||| ||| |||||||||||||||| || || |||||||||||||| |||||||||||||||    
T  51274436 aagatgcagaggaaaagaagggcattcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggggagaaccaagactct 51274535  T
Q  243 cgaattccttgagattatat 262  Q
    |||||| |||| ||||||||    
T  51274536 cgaatttcttgggattatat 51274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 45826414 - 45826357
Alignment:
Q  15 actagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaatt 72  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45826414 actagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaatt 45826357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 2386574 - 2386531
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgtt 55  Q
    |||||||||||||||||||||| |||||||||| ||||| ||||    
T  2386574 aatactagttgtttatttaataatattataaataagtaactgtt 2386531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 8638949 - 8639008
Alignment:
Q  187 attggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaa 246  Q
    |||||| |||||||| ||| || || |||||||||| |||||||| ||||||||||||||    
T  8638949 attggttgggagagaacaagctctctaattcttggaagggagagacccaagactctcgaa 8639008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 42510646 - 42510688
Alignment:
Q  210 tcgaattcttggaggggagagaaccaagactctcgaattccttg 253  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  42510646 tcgaattcttggaggg-agagacccaagactctcgaattccttg 42510688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 49987286 - 49987229
Alignment:
Q  194 gggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 253  Q
    ||||||||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||    
T  49987286 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttg 49987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 44 - 311
Target Start/End: Complemental strand, 41051190 - 41050923
Alignment:
Q  44 ttagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaata 143  Q
    ||||||| |||||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  41051190 ttagtaactgttacttatgtgcagtaattgctgtctgcagtagttgctatctactaaacttctatgtaactgatataggagagagttagtattataaata 41051091  T
Q  144 agatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctc 243  Q
    ||||||| || |||||| || ||||||||||||| |||||| ||| |||||||||||||||| || | |||||||||||||||| |||||||||||||||    
T  41051090 agatgcagaggaaaagacagatattcagggattgggataaaggataggtagggagagaccaagctcttgaattcttggaggggacagaaccaagactctc 41050991  T
Q  244 -gaattccttgagattatatattgtaataattactataaatttat-attttgatgtcagtttctatcaac 311  Q
     ||||| |||| |||  | |||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  41050990 ggaatttcttgggat--tctattgtgataattactataaatttataattttgatatcagtttctatcaac 41050923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 90 - 334
Target Start/End: Complemental strand, 39703034 - 39702793
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| |||||| |||     
T  39703034 ctgtctactaaacttctatgtaactgctataggagagagtttgtattataaataagttgcaaaggaaaagaaaggcattcagggattgggataaaggatc 39702935  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  39702934 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 39702838  T
Q  290 tttgatgtcagtttctatcaaccggtatcagagcaattctgatcc 334  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||    
T  39702837 tttgatatcagttcctatcaactggtatcagagcaattctgatcc 39702793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 90 - 309
Target Start/End: Complemental strand, 39701804 - 39701588
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||    
T  39701804 ctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggatt 39701705  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  39701704 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 39701608  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  39701607 tttgatatcagttcctatca 39701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 90 - 335
Target Start/End: Complemental strand, 29527464 - 29527225
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  |||| ||   || |||||||| ||||||||||||| || ||||||||||||||||||||||| |||||| ||||    
T  29527464 ctgtctactaaacttctatgtaacagctat-tg---gacttagtattttaaataagatgcagaggaaaagaaaggtattcagggattgggataaaggatt 29527369  T
Q  190 ggtagggagagaccaaactttcgaattcttgga-ggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttata 288  Q
    |||||||||||||||| || | ||||||||||| |||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||    
T  29527368 ggtagggagagaccaagctcttgaattcttggagggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttata 29527272  T
Q  289 ttttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 335  Q
    ||||||| || ||| |||||||| ||||||| |||| ||||||||||    
T  29527271 ttttgatatctgttcctatcaactggtatcaaagcagttctgatcca 29527225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 22950264 - 22950476
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||| |||||||||||||||||| |||||| ||||    
T  22950264 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaataaaggtattcagggattgggataaaggatt 22950359  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  22950360 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 22950456  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  22950457 tttgatatcagttcctatca 22950476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 92 - 310
Target Start/End: Original strand, 19934559 - 19934770
Alignment:
Q  92 gtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattgg 191  Q
    |||||||||||||||||||||| ||||||    ||| |||||||||||||||||||||| || |||||||||| ||| |||||||| |||||| ||||||    
T  19934559 gtctactaaacttctatgtaacaactata----agacttagtattataaataagatgcagaggaaaagaaaggcatttagggattgggataaaggattgg 19934654  T
Q  192 tagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattt 291  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||| ||||| |||| |||  |||||||||||  ||||||| | |||||||||    
T  19934655 tagggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttcttgggat--tatattgtaat-cttactattagtttatattt 19934751  T
Q  292 tgatgtcagtttctatcaa 310  Q
    |||| |||||| |||||||    
T  19934752 tgatatcagttcctatcaa 19934770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 90 - 309
Target Start/End: Complemental strand, 29526251 - 29526038
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgat-aaatgat 188  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||    
T  29526251 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggattaaaggat 29526156  T
Q  189 tggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttata 288  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||| |||  |||||||||||  ||||||| | ||||||    
T  29526155 tggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcggatttcttgggat--tatattgtaat-cttactattagtttata 29526059  T
Q  289 ttttgatgtcagtttctatca 309  Q
    ||||||| |||||| ||||||    
T  29526058 ttttgatatcagttcctatca 29526038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 19139374 - 19139484
Alignment:
Q  196 gagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgat 295  Q
    |||| ||||| || || |||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||| ||||||||    
T  19139374 gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttaaattttgat 19139470  T
Q  296 gtcagtttctatca 309  Q
     |||||||||||||    
T  19139471 atcagtttctatca 19139484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 35144618 - 35144558
Alignment:
Q  188 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaatt 248  Q
    |||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  35144618 ttggaagggagagaccaaggtctcgaattcttggaggggagagaaccaagactctcgaatt 35144558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 19934495 - 19934556
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  19934495 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 19934556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 22950202 - 22950263
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  22950202 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 22950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 39701837 - 39701805
Alignment:
Q  41 aaattagtaattgttacttatgtgcagtaattg 73  Q
    |||||||||| ||||||||||||||||||||||    
T  39701837 aaattagtaactgttacttatgtgcagtaattg 39701805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 40254325 - 40254617
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtg--tctgtctactaaacttctatg 109  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||  | |   | | |||||||||||||||||    
T  40254325 aatactagttgtttatttaataatattataaattagtaactgttacttgtgtgcagtaattgctgtctgcatcaattgttatctctactaaacttctatg 40254424  T
Q  110 taactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactt 209  Q
    ||||| ||||| |   |||||  |||||||||||||||||| || |||||||||| |||||||||||| |||||| |||||||||||||||||||| ||     
T  40254425 taactgctatagg---gagttcatattataaataagatgcagaggaaaagaaagg-attcagggattgggataaaggattggtagggagagaccaagctc 40254520  T
Q  210 tcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    || |||||||||||||||||||||||||||||||||||| |||| |||  | ||||||||| |||||||| ||||||||||||||| || ||||||||||    
T  40254521 tc-aattcttggaggggagagaaccaagactctcgaatttcttgggat--tctattgtaat-attactattaatttatattttgatatctgtttctatca 40254616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 2411340 - 2411061
Alignment:
Q  20 ttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtag-tgtctgtctactaaacttctatgtaactacta 118  Q
    |||||||||||||| |||||||||||||||| | ||||  ||||||||||| || | |||||||||  ||| | ||| | |||||| ||||||||| |||    
T  2411340 ttgtttatttaata-tattataaattagtaactattac--atgtgcagtaactgctatctgcagtaactgt-tatctgcaaaacttttatgtaacttcta 2411245  T
Q  119 tatgagagagttagtattataaataa-gatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattc 217  Q
    || |   |||||||||||||||| || | |||| || |||| |  || |||| |  |||  |||||| |||||||||||||||||||| ||  |||||||    
T  2411244 tagg---gagttagtattataaacaaagttgcagaggaaaataggggcattcggttatttggataaaggattggtagggagagaccaagct--cgaattc 2411150  T
Q  218 ttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
     |||||||||||||| |||||||||| |||| |||| |||  |  |||||||| |||||||| | ||||||||||||| |||||||||||||    
T  2411149 ctggaggggagagaatcaagactctcaaatttcttgggat--tcgattgtaat-attactattagtttatattttgatatcagtttctatca 2411061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 21661182 - 21661287
Alignment:
Q  194 gggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttg 293  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||| ||  ||||||||||||  ||||||| | |||||||||||    
T  21661182 gggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttggga--atatattgtaat-cttactattagtttatattttg 21661278  T
Q  294 atgtcagtt 302  Q
    || ||||||    
T  21661279 atatcagtt 21661287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 5176665 - 5176600
Alignment:
Q  187 attggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 253  Q
    |||||| |||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||    
T  5176665 attggttgggagagaccaagctctcgaattcttgga-gggagagacccaagactctcgaattccttg 5176600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 26247043 - 26246968
Alignment:
Q  231 aaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    |||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  26247043 aaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatcagttcctatca 26246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 90 - 334
Target Start/End: Original strand, 11073 - 11314
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||| |||||| ||||    
T  11073 ctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaagaaaagaaagatattcagggattgggataaaggatt 11172  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||  |||||| ||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  11173 ggtagggagagaccaagctctcgaaaacttggaagggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 11269  T
Q  290 tttgatgtcagtttctatcaaccggtatcagagcaattctgatcc 334  Q
    |||||| |||||| ||||||||  |||||| |||| |||||||||    
T  11270 tttgatatcagttcctatcaactcgtatcaaagcagttctgatcc 11314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 132 - 309
Target Start/End: Original strand, 12263 - 12437
Alignment:
Q  132 gtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagaga 231  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||| |||||| ||| |||||||||||||||| || | ||| ||||||||||||||||    
T  12263 gtattataaataagatgcagaggaaaagaaagttattcagggattgggataaaggataggtagggagagaccaagctcttgaactcttggaggggagaga 12362  T
Q  232 accaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    |||||||||||| |||| |||| |||  ||||||||||| |||||||| | ||||||||||||| | |||| ||||||    
T  12363 accaagactctctaatttcttgggat--tatattgtaat-attactattagtttatattttgatataagttcctatca 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 12164 - 12231
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtct 79  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||    
T  12164 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgttgtct 12231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 11020 - 11072
Alignment:
Q  20 ttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||    
T  11020 ttgtttatttaata-tattataaagtagtaactgttagttatgtgcagtaattg 11072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 45638960 - 45638746
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgta 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||  ||||| ||||||||||||||||    
T  45638960 aatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcggtaattgctgtctgcagtagttgctgtcaactaaacttctatgta 45638861  T
Q  112 actactatatgagagagttagtatt-----ataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaa 206  Q
    ||| ||||| ||| |||||||||||     |||||||||||||| || |||||||||| |||||||||||| |||||| | | ||||||||||||||||     
T  45638860 actgctataggagggagttagtattataatataaataagatgcagaggaaaagaaaggcattcagggattgggataaagggtaggtagggagagaccaag 45638761  T
Q  207 ctttcgaattcttgg 221  Q
    || ||||||||||||    
T  45638760 ctctcgaattcttgg 45638746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 90 - 310
Target Start/End: Original strand, 11962031 - 11962244
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    |||||||||||| |||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||| |||| | |||| ||||    
T  11962031 ctgtctactaaatttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcaggcattggggtaaaggatt 11962126  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||| ||||||| || |||||  |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  | ||||| | |||||||    
T  11962127 ggtagggatagaccaagctctcgaacacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-ctaactattagtttatat 11962223  T
Q  290 tttgatgtcagtttctatcaa 310  Q
    |||||| |||||| |||||||    
T  11962224 tttgatatcagttcctatcaa 11962244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 3567053 - 3567179
Alignment:
Q  180 ataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactat 279  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||| ||||||||  | ||||||||| ||||||||    
T  3567053 ataaaggataggtagggagagaccaaactatcgaattcttggaggggagagaaccaagacaattgaatttcttgagat--tgtattgtaat-attactat 3567149  T
Q  280 aaatttatattttgatgtcagtttctatca 309  Q
     |  |||||||||||| |||||||||||||    
T  3567150 taggttatattttgatctcagtttctatca 3567179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 27869367 - 27869436
Alignment:
Q  186 gattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgag 255  Q
    |||||||||||||||||||| || | ||||||||||| ||||||||  ||||||||||||||| ||||||    
T  27869367 gattggtagggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttgag 27869436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 11961969 - 11962030
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  11961969 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 11962030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 32992387 - 32992445
Alignment:
Q  194 gggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 253  Q
    ||||||||| || || |||| ||||||||||| ||||| |||||||||||||||||||||    
T  32992387 gggagagacaaagctctcgagttcttggaggg-agagacccaagactctcgaattccttg 32992445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 54291698 - 54291731
Alignment:
Q  220 ggaggggagagaaccaagactctcgaattccttg 253  Q
    ||||||||||||||||||||||||||||| ||||    
T  54291698 ggaggggagagaaccaagactctcgaatttcttg 54291731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 90 - 335
Target Start/End: Original strand, 6081202 - 6081440
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| ||||    
T  6081202 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggatt 6081297  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |||||||    
T  6081298 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatat 6081394  T
Q  290 tttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 335  Q
    |||||| |||||| |||||||| |||||||||||| ||||||||||    
T  6081395 tttgatatcagttcctatcaactggtatcagagcagttctgatcca 6081440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 6082409 - 6082621
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     ||| |||||||||||||||||| |  ||||||||||||||||||||||| |||||| ||||    
T  6082409 ctgtctactaaacttctatgtaacagctataggac----ttattattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggatt 6082504  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |||||||    
T  6082505 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatat 6082601  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  6082602 tttgatatcagttcctatca 6082621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 17901154 - 17901274
Alignment:
Q  188 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttat 287  Q
    |||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||| ||  || ||||||||| |||||||| |||||||    
T  17901154 ttgggagggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttggga--atctattgtaat-attactattaatttat 17901250  T
Q  288 a--ttttgatgtcagtttctatca 309  Q
    |  ||||||| |||||||||||||    
T  17901251 atgttttgatatcagtttctatca 17901274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 6081140 - 6081201
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  6081140 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 6081201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 6082347 - 6082408
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  6082347 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 6082408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 27021363 - 27021472
Alignment:
Q  192 tagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattt 291  Q
    |||||||||| ||| || ||||||||||| || |||| |||||| ||  |||||||| |||| |||  | ||||||||| |||||||| || | ||||||    
T  27021363 tagggagagatcaagctctcgaattcttgaagaggagggaaccagga--ctcgaatttcttgggat--tctattgtaat-attactattaagtaatattt 27021457  T
Q  292 tgatgtcagtttcta 306  Q
    |||| ||||||||||    
T  27021458 tgatatcagtttcta 27021472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 18133200 - 18132967
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||     
T  18133200 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggata 18133105  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  18133104 ggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 18133008  T
Q  290 tttgatgtcagtttctatcaaccggtatcagagcaattctga 331  Q
    |||||| |||||| ||||| || |||||||||||| ||||||    
T  18133007 tttgatatcagttcctatc-actggtatcagagcagttctga 18132967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 90 - 309
Target Start/End: Original strand, 21535709 - 21535921
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||     
T  21535709 ctgtctactaaacttctatgtaacagctataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggata 21535804  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  21535805 ggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 21535901  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  21535902 tttgatatcagttcctatca 21535921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 90 - 309
Target Start/End: Complemental strand, 18131994 - 18131782
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||    
T  18131994 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggatt 18131899  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  18131898 ggtagggagagaccaagctctcgaatacttggaagggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 18131802  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  18131801 tttgatatcagttcctatca 18131782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 129 - 309
Target Start/End: Complemental strand, 21395768 - 21395591
Alignment:
Q  129 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 228  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||||    
T  21395768 ttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggag 21395669  T
Q  229 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    | |||||||||||| ||||| |||| ||||||||  | ||||  ||||| | | ||||||||||||| |||||||||||||    
T  21395668 acaaccaagactcttgaatttcttgggattatat--tataatc-ttactgttagtttatattttgatatcagtttctatca 21395591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 7033443 - 7033339
Alignment:
Q  200 gaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtca 299  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||    
T  7033443 gaccaagctttcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatca 7033347  T
Q  300 gtttctat 307  Q
    ||| ||||    
T  7033346 gttcctat 7033339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 4303035 - 4303153
Alignment:
Q  188 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttat 287  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||| ||  || |||||| || |||| ||| |||||      
T  4303035 ttggaagggagagaccaagctctcgaattcttggaggggagagaaccaagactctagaatttcttggga--atctattgt-attattaatattaatttgg 4303131  T
Q  288 attttgatgtcagtttctatca 309  Q
    ||||||||  ||||||||||||    
T  4303132 attttgataccagtttctatca 4303153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 7033525 - 7033443
Alignment:
Q  91 tgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattg 177  Q
    |||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||||||||    
T  7033525 tgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattg 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 16189671 - 16189780
Alignment:
Q  199 agaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttata--ttttgatg 296  Q
    ||||||| || ||||||||||||||||||||||||||| |||||| | |||| || |||  | ||||||||| |||||||| ||||||||  |||||||     
T  16189671 agaccaagctctcgaattcttggaggggagagaaccaacactctcaatttccatgggat--tctattgtaat-attactattaatttatatgttttgata 16189767  T
Q  297 tcagtttctatca 309  Q
    |||||||||||||    
T  16189768 tcagtttctatca 16189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 7033583 - 7033521
Alignment:
Q  17 tagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtct 79  Q
    |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||    
T  7033583 tagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgttgtct 7033521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 18132056 - 18131995
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  18132056 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 18131995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 18133262 - 18133201
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  18133262 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 18133201  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 21535647 - 21535708
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| | || ||||||||    
T  21535647 aataatagtagtttatttaataatattataaataagtaactgttacttgtatgtagtaattg 21535708  T

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Target: scaffold0011 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 90 - 309
Target Start/End: Complemental strand, 205801 - 205589
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||| ||||||||||||| |||||| ||||    
T  205801 ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaagatattcagggattgggataaaggatt 205706  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 289  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |||||||    
T  205705 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatat 205609  T
Q  290 tttgatgtcagtttctatca 309  Q
    |||||| |||||| ||||||    
T  205608 tttgatatcagttcctatca 205589  T

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Target: scaffold0011; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 129 - 309
Target Start/End: Complemental strand, 211843 - 211666
Alignment:
Q  129 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 228  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||| ||||||||||||    
T  211843 ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggag 211744  T
Q  229 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 309  Q
    |||||||||||||||||||| |||| |||  | |||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  211743 agaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatattttgatatcagttcctatca 211666  T

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Target: scaffold0011; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 205863 - 205802
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  205863 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 205802  T

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Target: scaffold0018 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 178075 - 177907
Alignment:
Q  90 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 189  Q
    |||||||||||| |||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| | |||| ||||    
T  178075 ctgtctactaaatttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattggggtaaaggatt 177980  T
Q  190 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatat 262  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  177979 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatat 177907  T

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Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 178137 - 178076
Alignment:
Q  12 aatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 73  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  178137 aataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 178076  T

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