View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4627_low_9 (Length: 429)
Name: NF4627_low_9
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 31028099 - 31027698
Alignment:
| Q |
10 |
catcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaagaagaacatgaggaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31028099 |
catcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaagaagaacatgaggaca |
31028000 |
T |
|
| Q |
110 |
gctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31027999 |
gctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgat |
31027900 |
T |
|
| Q |
210 |
ccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaattgcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31027899 |
ccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaattgcc |
31027800 |
T |
|
| Q |
310 |
ataacaaagacttactgttatcatagaacctccaagaattgtcactgagatttgcaaacgccacaacatggccgaccttatcgattattttacgattatc |
409 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
31027799 |
ataacaaagacttattgttatcatagaacctccaagaattgtcactgagatttgcaaacgccacaacatggccgaccttatctattattttacggttatc |
31027700 |
T |
|
| Q |
410 |
ct |
411 |
Q |
| |
|
|| |
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|
| T |
31027699 |
ct |
31027698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 409
Target Start/End: Original strand, 33805876 - 33806278
Alignment:
| Q |
10 |
catcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaaga---agaacatgagg |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| || || |||||| ||| |
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|
| T |
33805876 |
catcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggtttacaactacgatgatgaagaacagaagg |
33805975 |
T |
|
| Q |
107 |
acagctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgttt |
206 |
Q |
| |
|
|||||||||| |||| || ||||| || || ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| |
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|
| T |
33805976 |
acagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttgaggaatcaccattt |
33806075 |
T |
|
| Q |
207 |
gatccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaatt |
306 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||| |
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|
| T |
33806076 |
gatccaccaccgttgagattagagaaaataatgacaccatcttttcccaaaactgcaatccagcttgcatttatacctgcatcaacagagaaaatgaatt |
33806175 |
T |
|
| Q |
307 |
gccataacaaagacttactgttatcatagaacctccaagaattgtcactgagatttgcaaacgccacaacatggccgaccttatcgattattttacgatt |
406 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||||| || |
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|
| T |
33806176 |
tccataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaacgattttacggtt |
33806275 |
T |
|
| Q |
407 |
atc |
409 |
Q |
| |
|
||| |
|
|
| T |
33806276 |
atc |
33806278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 33812428 - 33812026
Alignment:
| Q |
10 |
catcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaaga---agaacatgagg |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| || || |||||| ||| |
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|
| T |
33812428 |
catcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggtttacaactacgatgatgaagaacagaagg |
33812329 |
T |
|
| Q |
107 |
acagctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgttt |
206 |
Q |
| |
|
|||||||||| |||| || ||||| || || ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| |
|
|
| T |
33812328 |
acagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttgaggaatcaccattt |
33812229 |
T |
|
| Q |
207 |
gatccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaatt |
306 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
33812228 |
gatccaccaccgttgagattagagaaaataatgacaccatcttttcccaaaactgcaatccagcttgcatttatacctgcatcaacagagaaaatgaatt |
33812129 |
T |
|
| Q |
307 |
gccataacaaagacttactgttatcatagaacctccaagaattgtcactgagatttgcaaacgccacaacatggccgaccttatcgattattttacgatt |
406 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||||| || |
|
|
| T |
33812128 |
tccataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatcaacgattttacggtt |
33812029 |
T |
|
| Q |
407 |
atc |
409 |
Q |
| |
|
||| |
|
|
| T |
33812028 |
atc |
33812026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 33801409 - 33801765
Alignment:
| Q |
10 |
catcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaagaagaacatgaggaca |
109 |
Q |
| |
|
|||||||| ||||||||||||| | ||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33801409 |
catcatcaactttcagaaattcaacagatctttttgatt---catcatcgcaaggagaggcaaaacctggtttacaactaggaagaagaacaagaggaca |
33801505 |
T |
|
| Q |
110 |
gctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgat |
209 |
Q |
| |
|
||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
33801506 |
gctacacatacggttgtttgagcatattccgtagggatcacaaggttctggtgtaccacaaggatctcttggtattcttagtgaagcatcactgtttgat |
33801605 |
T |
|
| Q |
210 |
ccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaattgcc |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||| ||| | |||||| ||||||||||| |
|
|
| T |
33801606 |
ccagtaccgttgagattcgagaaagtaatgacaccgtcttttcctaaaactgcaatccaacttgcatgtat---------atcagagacaatgaattgcc |
33801696 |
T |
|
| Q |
310 |
ataacaaagacttactgttatcatagaacctccaagaattgtcactgagatttgcaaacgccacaacat |
378 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
33801697 |
ataacaaagacttattgttatcatagaacctccaagaattatcactgagatttgcaaaagccacaacat |
33801765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 49463058 - 49462715
Alignment:
| Q |
12 |
tcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaagaagaacatgaggacagc |
111 |
Q |
| |
|
|||||| |||||| ||||| ||||| |||| ||||||||||||| |||||||| | |||||| ||||||||| |||||| || | | ||||||| |
|
|
| T |
49463058 |
tcatcacctttcaaaaattggatagagttttctgatttatcatca---caaggagaaaaaaaaccaggtttacaattaggaataatagaa---ggacagc |
49462965 |
T |
|
| Q |
112 |
tacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgatcc |
211 |
Q |
| |
|
||||| | || ||||| | |||||| | || ||||| || || || ||||| |||||| |||||||||||| || || ||||||||||| || || || |
|
|
| T |
49462964 |
tacaccttcggttgttcgtgcatatgctataaggatcgcatggctccggtgtcccacaaggatcttgtggtatcctagtcgaagaatcaccattcgaccc |
49462865 |
T |
|
| Q |
212 |
accaccgttgagattcgagaaagtaatgacaccatcccttcccaaaactgcaatccaacttccatttatgcctccatcagcagagaaaatgaattgccat |
311 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||| || |||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
49462864 |
accactgttgagattagagaaagtaataacaccatcccttcccaaaacagcaatccaagttgcatttacacctacatcatcagagaaaatgaattgccac |
49462765 |
T |
|
| Q |
312 |
aacaaagacttactgttatcatagaacctccaagaattgtcactgagatt |
361 |
Q |
| |
|
||||||||||| ||| |||||| || ||||||||||||||||| ||||| |
|
|
| T |
49462764 |
aacaaagacttcttgtcatcataaaatctccaagaattgtcactaagatt |
49462715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 10071037 - 10071146
Alignment:
| Q |
160 |
gtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgatccaccaccgttgagattcgagaaagtaatgacaccatcccttcccaaaac |
259 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||||| |||| ||||||| ||||||| | ||||||||||| | |||||||||||| ||||| |
|
|
| T |
10071037 |
gtgtaccaaaaagatcttgtggtattcttgttgatgaatcactgtttattccaccattgttgagagtagagaaagtaataaaaccatcccttccgaaaac |
10071136 |
T |
|
| Q |
260 |
tgcaatccaa |
269 |
Q |
| |
|
|||||||||| |
|
|
| T |
10071137 |
tgcaatccaa |
10071146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 2529397 - 2529441
Alignment:
| Q |
148 |
cacaaggttctggtgtaccacaataatcttgtggtattcttgttg |
192 |
Q |
| |
|
||||||||| |||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
2529397 |
cacaaggttgtggtgtactacaagaatcttgaggtattcttgttg |
2529441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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