View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-1 (Length: 1162)
Name: NF4628-Insertion-1
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 478
Target Start/End: Original strand, 47874990 - 47875457
Alignment:
| Q |
7 |
aagtggaagtcttggatctgcaaagaaaaatgccaatccatctccaaaataagtcttattagagaaaattacaaaggaaaattgggtagtgaaatcagtg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47874990 |
aagtggaagtcttggatctgcaaagaaaaatgccaatccatctccaaaataagtcttattagagaaaattacaaaggaaaattgggtagtgaaatcagtg |
47875089 |
T |
|
| Q |
107 |
agttttcttgaggtcttttcccatagttgcaatggctcaaaacatgtcactctcccaacactgtaagtttcgtcttcgtaacttgaggttgaagtcagtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875090 |
agttttcttgaggtcttttcccatagttgcaatggctcaaaacatgtcactctcccaacactgtaagtttcgtcttcgtaacttgaggttgaagtcagtt |
47875189 |
T |
|
| Q |
207 |
ggatggatgaatacagcaaagaagcatctccttctagtttcacattatcatatttaaagccctgttggtaattaaatgagagtggttttacagaagtaat |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875190 |
ggatggatgaataaagcaaagaagcatctccttctagtttcacattatcatatttaaagccctgttggtaattaaatgagagtggttttacagaagtaat |
47875289 |
T |
|
| Q |
307 |
catcatatggaacaagaaaattattccaatttcacggagacagacatggcgaatagccatctctagctaggtgagagttgattttgaaattgaaactatc |
406 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47875290 |
catcatctggaacaagaaaattattccaatttcatggagacagacatggcgaatagccatct----ctaggtgagagttgattttgaaattgaaactatc |
47875385 |
T |
|
| Q |
407 |
taaattcaatgttgtcatacaatgtacaaatgattcatctatgtacttaattgtcaaactttgatcttcata |
478 |
Q |
| |
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| T |
47875386 |
taaattcaatgttgtcatacaatgtgcaaatgattcatctatgtacttaattgtcaaactttgatcttcata |
47875457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 542 - 1006
Target Start/End: Original strand, 47875521 - 47875986
Alignment:
| Q |
542 |
ctgtcttagtttttactcgatgtgaccatgcaaattggattagatgagcaacctctagcttaagagttcatcttccacaccctttttatattaaataaac |
641 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875521 |
ctgtcttagtttttactcgatgtgaccatgcaaattggattagatgagcaacctctagcttaagagttcatcttccacaccctttttatattaaataaac |
47875620 |
T |
|
| Q |
642 |
aaggcctataaacaatagaaaagacaattcannnnnnnncttcacgttgcacaagaactggtaaacaaagttctggagagaaaggtttaaaaagttctat |
741 |
Q |
| |
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| T |
47875621 |
aaggcctataaacaatagaaaagacaattctttttttttcttcacgttacacaagaactggtaaacaaagttctggagagaaaggtttaaaaagttctat |
47875720 |
T |
|
| Q |
742 |
aatttgtgcttggttggagggaaggagggggagagattgttttaaacaaaaatgtttcggtcacactttatttttcaaaaatgtttatatcgtgttgaaa |
841 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875721 |
aatttgtgcttggttggagggaaggagggggagagattgttttaaacaaaaatgtttcggtcacactttatttttcaaaaatgtttatatcgtgttgaaa |
47875820 |
T |
|
| Q |
842 |
actttaaaaattgtggttaatcgtgtagttaaattaaacacaattttgacagcaaatttaactatgtactcagttgaattatctaatttatatannnnnn |
941 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875821 |
actttaaaaattgtggttaatcgtgtagttaaattaaacacaattttgacagcaaatttaactatgtactcagttgaattatctaatttatatatttttt |
47875920 |
T |
|
| Q |
942 |
nactgcaaattgaactaactatgtacttaacttgattatctgatctgatattttt-aacatgatta |
1006 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
47875921 |
tactgcaaattgaactaactatgtacttaacttgattatctgatctgatatttttaaacatgatta |
47875986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 47870542 - 47870238
Alignment:
| Q |
2 |
ccaacaagtggaagtcttggatctgcaaagaaaaatgccaatccatctccaaaataagtcttattagagaaaattacaaaggaaaattgggtagtgaaat |
101 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||| ||||| ||| ||| |||||||||||||||||| |||||||||| |
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|
| T |
47870542 |
ccaacaaatggaagttctggatctgcaatgaaaaatgctaatccatctccaaaaccagtctcatttgagtaaattacaaaggaaaatttagtagtgaaat |
47870443 |
T |
|
| Q |
102 |
cagtgagttttcttgaggtcttttcccatagttgcaatggctcaaaacatgtcactctcccaacactgtaagtttcgtcttcgtaacttgaggttgaagt |
201 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||||| ||| | || |||| |||||||||| ||| | | || ||| |||||||||||||| |
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| T |
47870442 |
cagtgatttttcttgaggtcttgtcccatagttgcaatggctcgaaaaacgtgactcgcccaacactgaaagcattgctttggtaccttgaggttgaagt |
47870343 |
T |
|
| Q |
202 |
cagttggatggatgaatacagcaaagaagcatctccttctagtttcacattatcatatttaaagccctgttggtaattaaatgagagtggttttacagaa |
301 |
Q |
| |
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||||| ||| |||||| || ||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||||||||| ||| ||||| || |
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|
| T |
47870342 |
aagttgaatgtatgaatccaacaaagaagcatctccttctagcttcacatcatcatatttaaagcc---ttcgtaattaaatgagattggctttactaaa |
47870246 |
T |
|
| Q |
302 |
gtaatcat |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
47870245 |
gtaatcat |
47870238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 448 - 478
Target Start/End: Complemental strand, 47870135 - 47870105
Alignment:
| Q |
448 |
tgtacttaattgtcaaactttgatcttcata |
478 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
47870135 |
tgtacttaattgtcaaactttgatcttcata |
47870105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 570 - 619
Target Start/End: Complemental strand, 47869999 - 47869950
Alignment:
| Q |
570 |
tgcaaattggattagatgagcaacctctagcttaagagttcatcttccac |
619 |
Q |
| |
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||||||||||| || |||||||||||||||| | |||||| ||||||||| |
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|
| T |
47869999 |
tgcaaattggaatacatgagcaacctctagcattagagttgatcttccac |
47869950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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