View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-11 (Length: 435)
Name: NF4628-Insertion-11
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 222 - 414
Target Start/End: Complemental strand, 7087481 - 7087289
Alignment:
| Q |
222 |
ctcgatgggacaattctttcatgtgatatgtctttaccactagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgct |
321 |
Q |
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| T |
7087481 |
ctcgatgggacaattctttcgtgtgatatgtctttaccactagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgct |
7087382 |
T |
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| Q |
322 |
tcttatcctttgtgcctgaagaagatgctttggtatgttgattcggttggctagtacttttatctttgtctttggcttttcctattttcttgg |
414 |
Q |
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| T |
7087381 |
tcttatcctttgtgcctgaagaagatgctttggtatgttgattcggttggctagtacttttatctttgtctttggcttttcctacttttttgg |
7087289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 7087695 - 7087517
Alignment:
| Q |
8 |
gattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactaaattttttgtcctccata |
107 |
Q |
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| T |
7087695 |
gattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactgaattttttgtcctccata |
7087596 |
T |
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| Q |
108 |
ggttgtgttggttgcactgaggctgatattttatgaacaaactttgtaatatcatctttgatacctttatgcattggtg |
186 |
Q |
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| T |
7087595 |
ggttgtgttggttgcactgaggctgatattttatgaacaaactttgtaatatcatctttgatacctttatgcattggtg |
7087517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 220 - 394
Target Start/End: Complemental strand, 7667254 - 7667080
Alignment:
| Q |
220 |
cgctcgatgggacaattctttcatgtgatatgtctttaccactagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatg |
319 |
Q |
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| T |
7667254 |
cgcttgatgggacaattctttcgtgtgatatgtctttaccgctagagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatg |
7667155 |
T |
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| Q |
320 |
cttcttatcctttgtgcctgaagaagatgctttggtatgttgattcggttggctagtacttttatctttgtcttt |
394 |
Q |
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| T |
7667154 |
cttcttatcctttgtacctgaagaagatgcttttgcatgttgattcggttggctagtacttttatctttgtcttt |
7667080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 7667466 - 7667288
Alignment:
| Q |
8 |
gattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactaaattttttgtcctccata |
107 |
Q |
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|||||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
7667466 |
gattgagccttatttcttatctgattcagagccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactgaattttttgtcctctata |
7667367 |
T |
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| Q |
108 |
ggttgtgttggttgcactgaggctgatattttatgaacaaactttgtaatatcatctttgatacctttatgcattggtg |
186 |
Q |
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| T |
7667366 |
ggctgtgttggttgcactgaggctgatattttatgaacaaactttgtaatatcatctttgatacctttttgcattggtg |
7667288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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