View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-13 (Length: 363)
Name: NF4628-Insertion-13
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-13 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 43261042 - 43261386
Alignment:
| Q |
8 |
gacgacactagagcttgtgtagccatgtttttccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaa |
107 |
Q |
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| T |
43261042 |
gacgacactagagcttgtgtagccatgtttttccctcctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaa |
43261141 |
T |
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| Q |
108 |
tgctagatattgaagtaactataagtcaaatggaggaagatatgaagaactctaagccacatgcacgcaagcaacgtggaagttcttgtggtgaatattg |
207 |
Q |
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| T |
43261142 |
tgatagatattgaagtaactataagtcaaatggaggaagatatgaagaactctaagccacatgcacccaagcaacgtggaagttcttgtggtgaatattg |
43261241 |
T |
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| Q |
208 |
catggtgcaatatagtaaagatgagagtgtgatctagttctccaaccatgtttatacacgtaatatgatgaatcggataaggaatctcatgttattccca |
307 |
Q |
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| T |
43261242 |
catggtgcaatatagtaaagatgagagtgtgatctagttctccaaccatgtttatacacgtaatatgatgaatcggataaggaatctcatgttattccca |
43261341 |
T |
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| Q |
308 |
ctgctgttacgtttttgttggtatactaaattgaaatgtaacttac |
353 |
Q |
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| T |
43261342 |
ctgctgttacgtttttgttggtatac-aaattgaaatgtaacttac |
43261386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 43257446 - 43257554
Alignment:
| Q |
8 |
gacgacactagagcttgtgtagccatgtttttccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaa |
107 |
Q |
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||||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43257446 |
gacgacaatagaacttgtgtagccatgtttttcccttctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaa |
43257545 |
T |
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| Q |
108 |
tgctagata |
116 |
Q |
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| T |
43257546 |
tgatagata |
43257554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 43257554 - 43257582
Alignment:
| Q |
135 |
aaatggaggaagatatgaagaactctaag |
163 |
Q |
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| T |
43257554 |
aaatggaggaagatatgaagaactctaag |
43257582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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