View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-17 (Length: 223)
Name: NF4628-Insertion-17
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-17 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 5565236 - 5565031
Alignment:
| Q |
8 |
cccacaacacaatattatccaaccaccaccgtatactaccct-agaaatgcttatgtaccccatgatgagtcaacttaaattgaaaattcaattcaaaac |
106 |
Q |
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| T |
5565236 |
cccacaacacaatattatccaaccaccaccatatactaccccgagaaatgcttatgtaccccatgatgagtcaacttaaattgaaaattcaatgcaaaac |
5565137 |
T |
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| Q |
107 |
tattgttaccatgacccaaacaaatttggcccatccaaaaccaattaccccgcctacaacaactcacgatataacaacacaatatacaacaacccacgct |
206 |
Q |
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| T |
5565136 |
tattgttaccatgacccaaacaaatttggcccatccaaaaccaattaccccgcctacaacaacccacaatataacaacacaatatacaacaacccacgct |
5565037 |
T |
|
| Q |
207 |
acaacc |
212 |
Q |
| |
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|||||| |
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| T |
5565036 |
acaacc |
5565031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 2227388 - 2227504
Alignment:
| Q |
12 |
caacacaatattatccaaccaccaccgtatac-taccctagaaatgcttatgtaccccatgatgagtcaacttaaattgaaaattcaattcaaaactatt |
110 |
Q |
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| T |
2227388 |
caacaaaatatcatccaaccaccaccatatacctccccaagaaatgcatatgagccccattatcagtcaacttaccaacaaaattcaatgccaaactatg |
2227487 |
T |
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| Q |
111 |
gttaccatgacccaaac |
127 |
Q |
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| T |
2227488 |
gttacaatgacccaaac |
2227504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 3087194 - 3087327
Alignment:
| Q |
12 |
caacacaatattatccaaccaccaccgtata-ctaccctagaaatgcttatgtaccccatgatgagtcaacttaaattgaaaattcaattcaaaactatt |
110 |
Q |
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| T |
3087194 |
caacaaaatatcatccaaccaccaccatatacctccccgagaaatgcatatgagccccattatcagtcaacttaccaacaaaattcaatgccaagctatg |
3087293 |
T |
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| Q |
111 |
gttaccatgacccaaacaaatttggcccatccaa |
144 |
Q |
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|
| T |
3087294 |
gttacaatgacccaaaccaagttagcacatccaa |
3087327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 5054114 - 5054041
Alignment:
| Q |
12 |
caacacaatattatccaaccaccaccgtata-ctaccctagaaatgcttatgtaccccatgatgagtcaactta |
84 |
Q |
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|
| T |
5054114 |
caacaaaatatcatccaaccaccaccatatacctccccgagaaatgcatatgaaccccattatcagtcaactta |
5054041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 36631147 - 36631251
Alignment:
| Q |
24 |
atccaaccaccaccgtatac-taccctagaaatgcttatgtaccccatgatgagtcaacttaaattgaaaattcaattcaaaactattgttaccatgacc |
122 |
Q |
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| T |
36631147 |
atccaaccaccaccatatacctccccgagaaatgcatatgagccccattatgagtcaacttaccaacaaaattcaatgccaaattatggttacaatgacc |
36631246 |
T |
|
| Q |
123 |
caaac |
127 |
Q |
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||||| |
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|
| T |
36631247 |
caaac |
36631251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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