View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-18 (Length: 218)
Name: NF4628-Insertion-18
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 41847624 - 41847411
Alignment:
| Q |
5 |
acacaactcaccccacatggtatactgcaaaaaccccaccagcactatataaacccctattcgtcacaagcataactcacactctcctctcttaacctct |
104 |
Q |
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| T |
41847624 |
acacaactcaccccacatggtatactgcaaaaaccccaccagcactatataaacccctattcgtcacaagcataactcacactctcctctcttaacctct |
41847525 |
T |
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| Q |
105 |
agtagcttactagtatttgcaatatacaatactagctattactacaagagagtaactaagatggcttccaaaacttgctcctcccttgctattttcctca |
204 |
Q |
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| T |
41847524 |
agtagcttactagtatttgcaatatacaatactagctattactacaagagagtaactaagatggcttccaaaacttgttcctcccttgctattttcctca |
41847425 |
T |
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| Q |
205 |
caatcaacattctc |
218 |
Q |
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|||||||||||||| |
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| T |
41847424 |
caatcaacattctc |
41847411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 41833797 - 41833746
Alignment:
| Q |
161 |
taagatggcttccaaaacttgctcctcccttgctattttcctcacaatcaac |
212 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41833797 |
taagatggcttccaaaacttgttcctcccttgctattttcctcacaatcaac |
41833746 |
T |
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