View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-2 (Length: 1160)
Name: NF4628-Insertion-2
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 7 - 573
Target Start/End: Complemental strand, 28168243 - 28167673
Alignment:
| Q |
7 |
attcttcatgcaggttttccatgtaacaatgaggtagcatcctaagctaaattcacttatttgcaacttgttgcatcattaacaaataccattcgtatta |
106 |
Q |
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| T |
28168243 |
attcttcatgcaggttttccatgtaacaatgaggtagcatcctaagctaaattcacttatttgcaacttgttgcatcattaacaaataccattcgtatta |
28168144 |
T |
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| Q |
107 |
ttggacctctcattattttcgagtattgtttcctactaacctgatttgttgacttataagatttgaattcaggaagctcattagtcaacttagagttaaa |
206 |
Q |
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| T |
28168143 |
ttggacctctcattattttcgagtattgtttcctactaacttgatttgttgacttataagatttgaattcaagaagctcattagtcaacttaaagttaaa |
28168044 |
T |
|
| Q |
207 |
taaaatcactatacactttccatgagtgtctatgcattcttcaatgactgaatttttcacagttccattagtaatcgcatatgtcaaactagtctggtgg |
306 |
Q |
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| T |
28168043 |
taaaatcactatacactttccataagtgtctatgcattcttcaatgactgaatttttcacagttccattagtaatcgcatatgtcaaactagtctggtgg |
28167944 |
T |
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| Q |
307 |
ctcactacaacagaagaaggaag-nnnnnnnnaagtataccataaatttcctcttttttatttggacatttaatttctaaagaaaacaattcttcatctt |
405 |
Q |
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| T |
28167943 |
ctcactacaacagaagaaggaagtttttttttaagtatactataaatttcctcttttttatttggacatttaatttctgaagaaaacaattcttcatctt |
28167844 |
T |
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| Q |
406 |
gcatgacaaaaatat---tttcatcatgtattctcgagggcaaatataaattttttattagatcattatacacttgtcaaataaatataaatatgattac |
502 |
Q |
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| T |
28167843 |
gcatgacaaaaatattactttcatcatgtattctcgagggcaaatataaattttttattagatcattatacacttgtcaaataaatataaatatgattac |
28167744 |
T |
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| Q |
503 |
actatttcaaacgaacaatcaattatcatgacatctcgtcaatgacataactctcttatctgcaatagaat |
573 |
Q |
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| T |
28167743 |
actatttcaaacgaacaatcaattatcatgacatctcgtcaatgacataactctcttatctgcaatagaat |
28167673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 28171892 - 28171701
Alignment:
| Q |
7 |
attcttcatgcaggttttccatgtaacaatgaggtagcatcctaagctaaattcacttatttgc-aacttgttgcatcattaacaaataccattcgtatt |
105 |
Q |
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| T |
28171892 |
attcttcatgcaggtattccatgtaacaatgaggtagcatcctaaactaaattcacctatttgcaaacttgttgcatcattaacaaataccattcgtatt |
28171793 |
T |
|
| Q |
106 |
attggacctctcattattttcgagtattgtttcctactaacctgatttgttgacttataagatttgaattcaggaagctcattagtcaacttagagttaa |
205 |
Q |
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| T |
28171792 |
attg-----------------gagtattgtttcctactaacctgatttgttgagttataagttttgaactcaagaagttcattagtcaacttagagttaa |
28171710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 28166831 - 28166731
Alignment:
| Q |
627 |
tattttgttcaaacgaatgtatataagacacgacactttatattcatcattatcaatgagaaaaattcattcatgatttagatttgaaaaaggtagaagt |
726 |
Q |
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| T |
28166831 |
tattttgttcaaacgaatgtatataagacacgacactttatattcatcattatcaatgagaaaaattcattcataatttagatttgaaaaaggtagaagt |
28166732 |
T |
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| Q |
727 |
t |
727 |
Q |
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| T |
28166731 |
t |
28166731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 798 - 902
Target Start/End: Complemental strand, 28166695 - 28166591
Alignment:
| Q |
798 |
cagggaagatatagaggtaatgaaaatgtgtgcaacaaacatggaaagtgaaaatttagggcatagatacacgtaatacagttgacacagatattaaaag |
897 |
Q |
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| T |
28166695 |
cagggaagatatagaggtaatcaaaatgtgtgcaacaaacatggaaagtgaaaatttagggcatagatacacgtaatacagttgatacagatattaaagg |
28166596 |
T |
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| Q |
898 |
taatt |
902 |
Q |
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||||| |
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| T |
28166595 |
taatt |
28166591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 821 - 868
Target Start/End: Complemental strand, 28171303 - 28171256
Alignment:
| Q |
821 |
aaatgtgtgcaacaaacatggaaagtgaaaatttagggcatagataca |
868 |
Q |
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| T |
28171303 |
aaatgtgtgcaactaatgtggaaactgaaaatttagggcatagataca |
28171256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 928 - 978
Target Start/End: Complemental strand, 28166600 - 28166548
Alignment:
| Q |
928 |
aaagctaatcgaggcttaattatatacacatga--ggtgatacattaaacaac |
978 |
Q |
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|||| |||| ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
28166600 |
aaaggtaattgaggcttaattatatacacatgaaggttgatacattaaacaac |
28166548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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