View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4628-Insertion-3 (Length: 1147)

Name: NF4628-Insertion-3
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4628-Insertion-3
NF4628-Insertion-3
[»] chr3 (1 HSPs)
chr3 (15-1146)||(40675219-40676356)
[»] chr5 (1 HSPs)
chr5 (861-912)||(10096829-10096880)
[»] chr2 (1 HSPs)
chr2 (638-679)||(40179093-40179134)


Alignment Details
Target: chr3 (Bit Score: 1016; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 1016; E-Value: 0
Query Start/End: Original strand, 15 - 1146
Target Start/End: Original strand, 40675219 - 40676356
Alignment:
Q  15 tggtcacattttttggaatccttttactttctctctccttctctttggtctccatgaattttgcagcaaccatgaacattaaggtgacattgcacatttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675219 tggtcacattttttggaatccttttactttctctctccttctctttggtctccatgaattttgcagcaaccatgaacattaaggtgacattgcacatttt 40675318  T
Q  115 ccggtgattagagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaatagagagttacaacaatttgctttatcatcttcatctca 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  40675319 ccggtgatttgagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaatagagagttacaacaatttgcagtatcatcttcatctca 40675418  T
Q  215 tttttatagccgttttccaaaatcattctctttacgtaggaaagtgccatggtggtaccaaatactccatccacgttcaccatttgtggcaaaatggaac 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675419 tttttatagccgttttccaaaatcattctctttacgtaagaaagtgccatggtggtaccaaatactccatccacgttcaccatttgtggcaaaatggaac 40675518  T
Q  315 gtaacattcctctatgcttgtctctttgctttgtttttagaccctctttatttctatattcctattacaggagacaaagcgtgcatggaaacagatttgg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675519 gtaacattcctctatgcttgtctctttgctttgtttttagaccctctttatttctatattcctattacaggagacaaagcgtgcatggaaacagatttgg 40675618  T
Q  415 ttcttggtttgttagtcacgttctcgcgaaccgtcgcagatctcttcttcttgtttcacatgattcttaagttcagaactgccttcaattctcctacctc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40675619 ttcttggtttgttagtcacgttctcgcgaaccgtcgcagatctcttcttcttgtttcacataattcttaagttcagaactgccttcaattctcctacctc 40675718  T
Q  515 tttcgtttatggtcgcaaagaacttatcactgatccgggtcagatcgcccgccgatatatcaggcatgatttcattattgatcttcttgccacccttcct 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40675719 tttcgtttatggtcgcaaagaacttatcactgatccgggtcagatcgcccgccgatatatcaagcatgatttcattattgatcttcttgccacccttcct 40675818  T
Q  615 ttgcctcaggttagttactgagaaaaatcgttgaaagaatatatgttagttacgatttagaatttgttgtgtatagctatgattaaatatgcaaattagt 714  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675819 ttgcctcaggttagttactgggaaaaatcgttgaaagaatatatgttagttacgatttagaatttgttgtgtatagctatgattaaatatgcaaattagt 40675918  T
Q  715 tctagaatttgtaagcattggttgaaatagtgtcttacttttgtgagttggtaaatacatcttgaaattgtaaatgtcattcaaaacagtccatctatta 814  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675919 tctagaatttgtaagcattggttgaaatagtgtcttacttttgtgaattggtaaatacatcttgaaattgtaaatgtcattcaaaacagtccatctatta 40676018  T
Q  815 atttatttataacattagaggtataattttccaataactagtcactaatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaact 914  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40676019 atttatttataacattagaggtataatttgccaataactagtcactaatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaact 40676118  T
Q  915 gataacattatgtgagatcgatgtgcaacatgacacgtcacaccctcttaataacagaagctaagtgagggacattttgcgtgacattttacaatttct- 1013  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  40676119 gataacattatgtgagatcgatgtgcaatatgacacgtcacaccctcttaataacaaaagctaagtgagggacattttgcgtgacattttacaatttcta 40676218  T
Q  1014 aaatgtatatgccaattag-aaaattgagaaattatttcaatcatacttacagtttccgtgact-atctgctgattca-gtttttagttattgagcagca 1110  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||| ||||||||||||    
T  40676219 aaatgtatatgccaattcgaaaaattgagaaattatttcaatcatacttacagtttcggtgactaatctgctgattcatttttttaggtattgagcagca 40676318  T
Q  1111 ggaacattt-actgtaa--tagtaatatcactgtaataa 1146  Q
     |||||||| |||||||  |||| |||||||||||||||    
T  40676319 agaacatttaactgtaaattagt-atatcactgtaataa 40676356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 861 - 912
Target Start/End: Original strand, 10096829 - 10096880
Alignment:
Q  861 aatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaa 912  Q
    ||||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  10096829 aatttgtcactgatatgacctaaattttataggcaaattagttgatagtgaa 10096880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 679
Target Start/End: Complemental strand, 40179134 - 40179093
Alignment:
Q  638 aaaatcgttgaaagaatatatgttagttacgatttagaattt 679  Q
    |||||||||||||||| |||||||||||| |||||| |||||    
T  40179134 aaaatcgttgaaagaacatatgttagttatgatttataattt 40179093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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