View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-4 (Length: 832)
Name: NF4628-Insertion-4
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 7 - 633
Target Start/End: Original strand, 53674502 - 53675128
Alignment:
| Q |
7 |
aaatagcaaggtacattatttttcagtaatttgatttgtattttgttaattaacattactttagaaaaattgaattaccttgaaaatctgttgaattgat |
106 |
Q |
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| T |
53674502 |
aaatatcaaggtacattatttttcagtaatttgatttgtattttgttaattaacattactttagaaaaactgaattaccttgaaaatctgttgaattgat |
53674601 |
T |
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| Q |
107 |
attctgttctgtttttgtgctccttccaactgagacaattgtgcagccttcatgcacatgctcaaagcaatacttggtaattcctttagaggtgccaatt |
206 |
Q |
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| T |
53674602 |
attctgttctgtttttgtgttccttccaactgagacaattgtgcagccttcatgcacatgctcaaagcaataattggtaattcctttagaggtgccaatt |
53674701 |
T |
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| Q |
207 |
ctataaaaaatgataaagggggttgtcaaatgcttagatctttataaatgatttgaataaatgttacactgatgagttcttacttattcgttttgtttct |
306 |
Q |
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| T |
53674702 |
ctataaacaatgataaagggggttgtcaaatgcttagatctttataaatgatttgaataaatgttacactgatgagttcttacttaattgttttgtttct |
53674801 |
T |
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| Q |
307 |
tgttccgccaagaagaagaagaaaatcagcagaaattgacttggcttcctccactaaaccaccacctactgtggaactcaatgccacttttgcctccaaa |
406 |
Q |
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| T |
53674802 |
tgttccgccaagaagaagaagaaaatcagcagaaattgacttggcttcctccactaaaccaccacctactgtggaactcaatgccacttttgcctccaaa |
53674901 |
T |
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| Q |
407 |
ttaacctgataatgatgttttcatcagcattcttcgactctaatagcaaaccatattaaagtctaaccattatatgacagacagggtcaactatattttt |
506 |
Q |
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| T |
53674902 |
ttaacctgataatgatgttttcatcagcattcttcgactctaatagcaaaccatattaaagtctaaccattatatgacagacagggtcaactatattttt |
53675001 |
T |
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| Q |
507 |
gattccctctaaaatactcttcatcttagtacttactaaaatttgatcccctccatgtctctagaatccatccctattcaatgtcgttttttgcggacta |
606 |
Q |
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| T |
53675002 |
tattccctctaaaatactcttcatcttagtacttactaaaatttggtccactccatgtctctagaatccatccctatcgaatgtcgttttttgcagacta |
53675101 |
T |
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| Q |
607 |
atcagaaggaatgcaaatcacgtaaac |
633 |
Q |
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| T |
53675102 |
atcagaaggaatgcaaatcacgtaaac |
53675128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 634 - 832
Target Start/End: Original strand, 53675181 - 53675376
Alignment:
| Q |
634 |
atgtgttgcattccccctatccaataacaaaacattattttttcctcaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
733 |
Q |
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| T |
53675181 |
atgtgttgcattccccctatccaataacaaaacattattttttccccaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
53675280 |
T |
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| Q |
734 |
gtttgaaattaattacctgtttggaccaacaacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtc |
832 |
Q |
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| T |
53675281 |
gtttgaaattaattacctgtttggac---caacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtc |
53675376 |
T |
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