View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4628-Insertion-5 (Length: 688)
Name: NF4628-Insertion-5
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-5 |
 | |
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| [»] chr1 (8 HSPs) |
| |
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Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 688
Target Start/End: Complemental strand, 42212532 - 42211868
Alignment:
| Q |
8 |
ctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactggatccagannnnnnngttctgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
42212532 |
ctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactggatccagatttttttgttctgt |
42212433 |
T |
|
| Q |
108 |
aactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42212432 |
aactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggatgtt |
42212341 |
T |
|
| Q |
208 |
tgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42212340 |
tgcaaaagtgtctgctgtgttttagggcaggttctgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaat |
42212241 |
T |
|
| Q |
308 |
ttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataagatctttcatt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
42212240 |
ttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcatt |
42212141 |
T |
|
| Q |
408 |
agttcaagagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212140 |
agttcaagagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgag |
42212041 |
T |
|
| Q |
508 |
cacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212040 |
cacgcagtctttcagtttcctaagaagggatgagacggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaatt |
42211949 |
T |
|
| Q |
608 |
cttagtcctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatc |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211948 |
cttagtcctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatc |
42211868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 8 - 688
Target Start/End: Complemental strand, 42203664 - 42203000
Alignment:
| Q |
8 |
ctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactggatccagannnnnnngttctgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42203664 |
ctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactggatccagatttttttgttctgt |
42203565 |
T |
|
| Q |
108 |
aactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42203564 |
aactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggatgta |
42203473 |
T |
|
| Q |
208 |
tgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203472 |
tgcaaaagtgtctgctgtgttttagggcaggttctgtgaccagcatcaagccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaat |
42203373 |
T |
|
| Q |
308 |
ttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataagatctttcatt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
42203372 |
ttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcatt |
42203273 |
T |
|
| Q |
408 |
agttcaagagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203272 |
agttcaagagatataggacatcgaaaatcgactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgag |
42203173 |
T |
|
| Q |
508 |
cacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203172 |
cacgcagtctttcagtttcctaagaagggatgagacggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaatt |
42203081 |
T |
|
| Q |
608 |
cttagtcctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatc |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203080 |
cttagtcctcagatgcagcttctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatc |
42203000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 42420715 - 42421306
Alignment:
| Q |
8 |
ctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactggatccagannnnnnngttctgt |
107 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
42420715 |
ctttgctgttcaatatcattacttgttagcttatccaataaagctttgatagcagttttgtcacaatctgaaagactggttccagatttctttgttctgc |
42420814 |
T |
|
| Q |
108 |
aactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
42420815 |
aactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggttgtt |
42420906 |
T |
|
| Q |
208 |
tgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42420907 |
tgcaaaagtgtctgctgtgttttagggcaggttctgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaat |
42421006 |
T |
|
| Q |
308 |
ttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataagatctttcatt |
407 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||| ||| | | ||||||||| |
|
|
| T |
42421007 |
ttcatcaataatcatagctgacatcatcagaacattgtttcgcacaaaaaggattgtcgataatacctgaccggttgagacgattacagggtctttcatt |
42421106 |
T |
|
| Q |
408 |
agttcaagagatataggacatcgaaaatc----------------gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacct |
491 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||||||||| ||| |||||| || ||||||||||||||||| |
|
|
| T |
42421107 |
agttcaagagatataggacaccgaaaatcatctgggattacaggagaccggtgcttaattggaac-attctcact--------gtcataggtatcaacct |
42421197 |
T |
|
| Q |
492 |
caggattttctgtgagcacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatg |
591 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||| | ||||| |
|
|
| T |
42421198 |
caggattttctgcgagcacgcagtctttcagtttcctaagaagagatgagacggtttcaaaactg--------tctcctagttctccgttgcttgttatg |
42421289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 197 - 608
Target Start/End: Complemental strand, 42218332 - 42217915
Alignment:
| Q |
197 |
taagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaat |
296 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42218332 |
taagggatgtatgcaaaagtgtctactgtattttagggcaggttatgtgaccagcatcaagtcatttttgaatgcaggatctttcatatgtctgcaaaat |
42218233 |
T |
|
| Q |
297 |
aaagtaggaatttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| | |
|
|
| T |
42218232 |
aaagtaggaatttcatcaataatcataaccgacaccatcagaacaatgtttcacacaaaaaggattgtggataatacctgaccggttgagacaattacag |
42218133 |
T |
|
| Q |
397 |
gatctttcattagttcaagagatataggacatcgaaaatc----------------gactggtgcttaattgaaactattctcgctctcatagagtcata |
480 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||| || |||| |
|
|
| T |
42218132 |
gatcttcccttaattcaagagatataggacatcgaaaatcctctgggattacacgagaccagtgcttaattgaaac-attcgcgccct--------cata |
42218042 |
T |
|
| Q |
481 |
ggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgt |
580 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| || || ||| |||||||||||| |
|
|
| T |
42218041 |
ggtatcaaccttaggattttctgcgagcatgcagtttttcagtttcctaagaagggatgagatggtttcaactttcaaaact-gtctcctagttctccgt |
42217943 |
T |
|
| Q |
581 |
tgcctattatgaccaattcgtgtaattc |
608 |
Q |
| |
|
| | | |||||||||||||||||||||| |
|
|
| T |
42217942 |
tactttttatgaccaattcgtgtaattc |
42217915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 42408893 - 42409172
Alignment:
| Q |
9 |
tttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactggatccagannnnnnngttctgta |
108 |
Q |
| |
|
||||||| |||||| |||||| |||| ||||| ||||||| ||||||||||| |||||||| |||||||||||| ||| ||||| ||||| | |
|
|
| T |
42408893 |
tttgctgttcaataccattacttgtttgcttatccaataatgctttgatagcggttctgtcgcaatctgaaagattggtcccagatttctttgttctaca |
42408992 |
T |
|
| Q |
109 |
actcccttgctt---ctttggtagttcaacaccattgctat-cacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggat |
204 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||||||||| | |
|
|
| T |
42408993 |
gttcccttgctttttctttgttagttaaacaccattgctgttcacaccataaaccaatcagactcttcaaaacatggttag--------gagtaagggct |
42409084 |
T |
|
| Q |
205 |
gtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaa |
293 |
Q |
| |
|
|| | | ||||| ||||||||||||| | ||| ||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
42409085 |
gtat-ccaaagtatctgctgtgttttcgcgcaagttctgtgaccagcatcaaataatttttgaatgcaagatctttcatatgtccgcaa |
42409172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 629 - 685
Target Start/End: Original strand, 42421338 - 42421394
Alignment:
| Q |
629 |
ctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatct |
685 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
42421338 |
ctcagatgcaacttctcagagagtcttttgagtatagcaggatcagggtctttatct |
42421394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 42218389 - 42218340
Alignment:
| Q |
17 |
tcaatatcattacgtgttagcttaaccaataaagctttgatagcagttct |
66 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42218389 |
tcaatatcattacttgttagcttatccaataaagctttgatagcagttct |
42218340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 685
Target Start/End: Complemental strand, 42217878 - 42217827
Alignment:
| Q |
634 |
atgcaacttctcagagagccttttgagtataacaggatcagggtctttatct |
685 |
Q |
| |
|
|||||||||||||| | | |||||||| ||| |||||||||||||||||||| |
|
|
| T |
42217878 |
atgcaacttctcagtgggtcttttgaggatagcaggatcagggtctttatct |
42217827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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