View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4628-Insertion-6 (Length: 592)

Name: NF4628-Insertion-6
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4628-Insertion-6
NF4628-Insertion-6
[»] chr1 (26 HSPs)
chr1 (7-431)||(37976029-37976463)
chr1 (495-592)||(38335919-38336016)
chr1 (495-592)||(48119629-48119726)
chr1 (495-592)||(35003295-35003392)
chr1 (495-592)||(45639734-45639831)
chr1 (495-592)||(44112678-44112775)
chr1 (495-592)||(46168384-46168481)
chr1 (495-592)||(26585463-26585560)
chr1 (495-592)||(38113197-38113294)
chr1 (490-592)||(41065149-41065251)
chr1 (495-592)||(45427747-45427844)
chr1 (489-592)||(45705820-45705923)
chr1 (495-588)||(37814779-37814872)
chr1 (495-588)||(43571092-43571185)
chr1 (495-588)||(5489777-5489870)
chr1 (495-592)||(35000115-35000212)
chr1 (495-588)||(48498968-48499061)
chr1 (495-551)||(14427348-14427404)
chr1 (438-481)||(37975909-37975952)
chr1 (496-588)||(2497568-2497660)
chr1 (495-588)||(23989529-23989623)
chr1 (495-582)||(50448272-50448359)
chr1 (495-588)||(750311-750404)
chr1 (496-588)||(4401329-4401422)
chr1 (496-588)||(7447828-7447919)
chr1 (536-588)||(4888085-4888137)
[»] chr7 (28 HSPs)
chr7 (495-592)||(31513288-31513385)
chr7 (495-592)||(31408635-31408732)
chr7 (495-592)||(40236920-40237017)
chr7 (495-592)||(24280598-24280695)
chr7 (495-592)||(27535233-27535330)
chr7 (496-588)||(10573751-10573843)
chr7 (495-592)||(33384871-33384969)
chr7 (495-588)||(35069722-35069815)
chr7 (496-588)||(4638205-4638297)
chr7 (497-588)||(26898408-26898499)
chr7 (495-588)||(5015396-5015489)
chr7 (495-588)||(24001018-24001111)
chr7 (495-588)||(42538437-42538530)
chr7 (495-592)||(43317444-43317541)
chr7 (495-582)||(9216303-9216389)
chr7 (490-592)||(5194233-5194335)
chr7 (495-561)||(39998409-39998475)
chr7 (503-588)||(32029823-32029908)
chr7 (496-588)||(43343630-43343722)
chr7 (496-588)||(44326180-44326272)
chr7 (496-588)||(44416940-44417032)
chr7 (495-588)||(5810930-5811023)
chr7 (495-588)||(41861675-41861770)
chr7 (495-582)||(42972853-42972940)
chr7 (496-588)||(16180363-16180454)
chr7 (532-580)||(38160593-38160641)
chr7 (510-588)||(27393266-27393344)
chr7 (495-588)||(45326021-45326114)
[»] chr4 (37 HSPs)
chr4 (495-592)||(17619154-17619251)
chr4 (490-592)||(32728353-32728455)
chr4 (495-592)||(711961-712058)
chr4 (495-592)||(55272378-55272475)
chr4 (496-588)||(3756252-3756344)
chr4 (496-584)||(35037007-35037095)
chr4 (495-592)||(46827708-46827805)
chr4 (495-588)||(48435585-48435678)
chr4 (493-592)||(41878405-41878504)
chr4 (495-582)||(55966358-55966445)
chr4 (495-581)||(28982835-28982921)
chr4 (495-592)||(960872-960969)
chr4 (495-592)||(28988474-28988571)
chr4 (496-592)||(38851515-38851611)
chr4 (490-574)||(49229684-49229768)
chr4 (497-588)||(23204784-23204875)
chr4 (495-588)||(27864565-27864658)
chr4 (495-588)||(33703142-33703235)
chr4 (495-588)||(45490319-45490412)
chr4 (495-588)||(48463456-48463549)
chr4 (496-588)||(27893848-27893940)
chr4 (495-582)||(1771278-1771365)
chr4 (495-588)||(23035981-23036074)
chr4 (495-588)||(25051694-25051787)
chr4 (495-588)||(12496957-12497050)
chr4 (527-592)||(19879987-19880052)
chr4 (495-588)||(27316719-27316812)
chr4 (495-588)||(27550310-27550403)
chr4 (496-592)||(41327545-41327641)
chr4 (489-588)||(21687001-21687100)
chr4 (496-582)||(43514698-43514784)
chr4 (495-588)||(35017734-35017826)
chr4 (495-592)||(41847972-41848069)
chr4 (496-588)||(43949807-43949900)
chr4 (496-588)||(39631102-39631195)
chr4 (496-588)||(31680904-31680996)
chr4 (536-592)||(56215899-56215955)
[»] scaffold0003 (1 HSPs)
scaffold0003 (496-592)||(45721-45817)
[»] chr6 (18 HSPs)
chr6 (496-592)||(27441544-27441640)
chr6 (495-592)||(33242404-33242501)
chr6 (495-588)||(33253914-33254007)
chr6 (495-588)||(3213401-3213494)
chr6 (495-588)||(13743227-13743320)
chr6 (495-588)||(13748727-13748820)
chr6 (495-588)||(30014344-30014437)
chr6 (496-588)||(24203993-24204085)
chr6 (495-588)||(7273341-7273434)
chr6 (495-588)||(7367550-7367643)
chr6 (495-588)||(9698339-9698432)
chr6 (495-588)||(21279930-21280023)
chr6 (495-588)||(26670015-26670108)
chr6 (495-588)||(21293683-21293776)
chr6 (495-588)||(26466800-26466893)
chr6 (495-592)||(31109224-31109321)
chr6 (496-588)||(30735984-30736076)
chr6 (495-588)||(7292748-7292841)
[»] chr3 (24 HSPs)
chr3 (495-592)||(10457894-10457991)
chr3 (495-592)||(9434125-9434222)
chr3 (495-592)||(4190267-4190364)
chr3 (495-592)||(51757594-51757691)
chr3 (495-592)||(52627979-52628076)
chr3 (488-592)||(25996262-25996366)
chr3 (495-592)||(34791830-34791927)
chr3 (496-588)||(53581864-53581956)
chr3 (495-588)||(40480750-40480843)
chr3 (495-588)||(45126934-45127027)
chr3 (495-582)||(42100689-42100776)
chr3 (495-588)||(25413682-25413775)
chr3 (495-588)||(40808866-40808959)
chr3 (495-588)||(46941054-46941147)
chr3 (495-588)||(54237097-54237190)
chr3 (495-588)||(54246154-54246247)
chr3 (495-588)||(24688408-24688501)
chr3 (495-588)||(36150131-36150224)
chr3 (495-588)||(42394425-42394518)
chr3 (543-592)||(51249357-51249406)
chr3 (495-588)||(53273690-53273783)
chr3 (495-588)||(47191032-47191124)
chr3 (496-588)||(27748565-27748657)
chr3 (548-588)||(52629882-52629922)
[»] chr8 (25 HSPs)
chr8 (490-592)||(18066720-18066822)
chr8 (495-592)||(35181517-35181614)
chr8 (495-592)||(34304789-34304886)
chr8 (495-590)||(16358837-16358933)
chr8 (495-592)||(16603628-16603725)
chr8 (496-592)||(33629995-33630091)
chr8 (495-588)||(2546997-2547090)
chr8 (495-592)||(19386567-19386669)
chr8 (495-588)||(5754904-5754997)
chr8 (495-588)||(11582767-11582860)
chr8 (495-588)||(29705363-29705456)
chr8 (495-588)||(36743489-36743582)
chr8 (496-588)||(29800956-29801048)
chr8 (496-588)||(42295197-42295289)
chr8 (496-588)||(42699259-42699351)
chr8 (495-580)||(1375543-1375628)
chr8 (496-588)||(20148762-20148854)
chr8 (496-588)||(26125637-26125729)
chr8 (495-582)||(45397317-45397404)
chr8 (502-588)||(31384672-31384758)
chr8 (490-588)||(42197441-42197539)
chr8 (495-588)||(30660748-30660841)
chr8 (496-581)||(30912575-30912660)
chr8 (548-592)||(10678154-10678198)
chr8 (495-588)||(2165969-2166062)
[»] chr2 (27 HSPs)
chr2 (495-592)||(16803969-16804066)
chr2 (495-592)||(16843251-16843348)
chr2 (495-592)||(43114558-43114655)
chr2 (495-592)||(966836-966933)
chr2 (495-592)||(18491706-18491803)
chr2 (496-592)||(11825656-11825752)
chr2 (496-592)||(41281976-41282072)
chr2 (495-592)||(12415462-12415559)
chr2 (495-592)||(12427522-12427619)
chr2 (496-592)||(4299422-4299518)
chr2 (495-588)||(34895747-34895840)
chr2 (496-579)||(6518484-6518566)
chr2 (495-588)||(1750415-1750508)
chr2 (495-592)||(34817778-34817875)
chr2 (518-592)||(4451952-4452026)
chr2 (490-592)||(14285672-14285774)
chr2 (495-588)||(4764732-4764825)
chr2 (495-588)||(12302259-12302352)
chr2 (495-592)||(13780737-13780834)
chr2 (495-588)||(30838633-30838726)
chr2 (495-588)||(16096748-16096841)
chr2 (495-588)||(19047158-19047251)
chr2 (495-590)||(42026768-42026865)
chr2 (515-592)||(12531665-12531741)
chr2 (495-580)||(43335777-43335862)
chr2 (496-588)||(43490407-43490499)
chr2 (496-590)||(8896587-8896681)
[»] chr5 (12 HSPs)
chr5 (495-592)||(17208075-17208172)
chr5 (495-592)||(30622721-30622817)
chr5 (495-592)||(32473396-32473493)
chr5 (495-588)||(7617134-7617227)
chr5 (495-588)||(2614655-2614748)
chr5 (495-588)||(18033983-18034076)
chr5 (495-588)||(22512306-22512399)
chr5 (495-588)||(33801470-33801563)
chr5 (495-588)||(38470580-38470673)
chr5 (495-588)||(41334669-41334762)
chr5 (496-588)||(5256997-5257089)
chr5 (495-551)||(33855086-33855142)
[»] scaffold0100 (1 HSPs)
scaffold0100 (495-592)||(35458-35555)
[»] scaffold0385 (1 HSPs)
scaffold0385 (495-588)||(11252-11345)
[»] scaffold0187 (2 HSPs)
scaffold0187 (495-588)||(14194-14287)
scaffold0187 (495-588)||(24522-24615)
[»] scaffold0119 (1 HSPs)
scaffold0119 (495-588)||(686-779)
[»] scaffold0038 (1 HSPs)
scaffold0038 (495-588)||(112656-112749)
[»] scaffold0157 (1 HSPs)
scaffold0157 (495-588)||(23427-23520)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 37976463 - 37976029
Alignment:
Q  7 aggacacacaagtccaatattgatcaacacaggtcaaaagctctcataaatgtgcacataacttggttaacgaatgtgttgcgtgagaaatgtgcaaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37976463 aggacacacaagtccaatattgatcaacacaggtcaaaagctctcataaatgtgcacataacttggttaacgaatgtgttgcgtgagaaatgtgcaaact 37976364  T
Q  107 tgtgtgaatgtatgttatatatat----------tcattgaaatatataaaatctataaattagaggcacacatgcaagaatgaaaataaagatgttgcg 196  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37976363 tgtgtgaatgtatgttatatatatataagggtattcattgaaatatataaaatctataaattagaggcacacatgcaagaatgaaaataaagatgttgcg 37976264  T
Q  197 tgaacggaacgtagacctcaggttaattaagcaagtgatgagttatgggtggatttgaggtgagaattggtcactatagtcataataggttttgacgttg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  37976263 tgaacggaacgtagacctcaggttaattaagcaagtgatgagttatgggtggatttgaggtgagaattggtcactatagtcacaataggttttgacgtta 37976164  T
Q  297 caccaaatgtttatgtcacttagttagtcagtggtatttgtgatatgtattcacttatattcctatcttgtgtgcccattgataacaacaagctttgata 396  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37976163 caccaaatgtttatgtcacttagttagtcagtggtatttgtgatctgtaatcacttataatcctatcttgtgtgcccattgataacaacaagctttgata 37976064  T
Q  397 tgataagtataacgtatagctaagaaggaaaagtt 431  Q
    |||||||||||||||||||||||||||||||||||    
T  37976063 tgataagtataacgtatagctaagaaggaaaagtt 37976029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 38335919 - 38336016
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38335919 gaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 38336016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 48119629 - 48119726
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48119629 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 48119726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 35003295 - 35003392
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  35003295 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctct 35003392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 45639831 - 45639734
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  45639831 gaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctct 45639734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 44112678 - 44112775
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||||||||||||||    
T  44112678 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 44112775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 46168384 - 46168481
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46168384 gaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctct 46168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 26585463 - 26585560
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26585463 gaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctct 26585560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 38113294 - 38113197
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||| ||||    
T  38113294 gaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactct 38113197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 490 - 592
Target Start/End: Original strand, 41065149 - 41065251
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttc 589  Q
    |||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||  ||||| |||| ||||||||||||||||||||||    
T  41065149 tttaggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttc 41065248  T
Q  590 tct 592  Q
    |||    
T  41065249 tct 41065251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 45427844 - 45427747
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||  |||||||||| ||| ||||| |||| |||||||||||||||||||||||||    
T  45427844 gaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctct 45427747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 489 - 592
Target Start/End: Original strand, 45705820 - 45705923
Alignment:
Q  489 atttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||| |||||||||| |||||||| |||||||||||||  ||||||||||  |||||||||| ||| |||||  |||||||||||||||||||||||||    
T  45705820 atttaggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatacttt 45705919  T
Q  589 ctct 592  Q
    ||||    
T  45705920 ctct 45705923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 37814779 - 37814872
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| ||||| ||||| ||||||| |  |||||||| |||||| |||||||||||||| |||||||||| ||||||||| |||||    
T  37814779 gaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacacttt 37814872  T

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Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 43571185 - 43571092
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||  |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  43571185 gaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 43571092  T

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Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 5489777 - 5489870
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  5489777 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 5489870  T

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Target: chr1; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 35000212 - 35000115
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||||  ||||||||||||| |||||||| |   |||| |||| ||| |||||  |||||| ||||||||||||||||||||||    
T  35000212 gaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctct 35000115  T

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Target: chr1; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 48499061 - 48498968
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||||||||| |  ||||| | |||||||| | |||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  48499061 gaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacacttt 48498968  T

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Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 495 - 551
Target Start/End: Original strand, 14427348 - 14427404
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcatta 551  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  14427348 gaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 438 - 481
Target Start/End: Complemental strand, 37975952 - 37975909
Alignment:
Q  438 taagttgagttttctttcttgttattgtcggcagttatgaattg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37975952 taagttgagttttctttcttgttattgtcggcagttatgaattg 37975909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 2497660 - 2497568
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| |||||  |||| |||||||  | |||||||| |||||  |||||||||||||| |||| ||||||||||||||| |||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaaccacacttt 2497568  T

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Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 23989623 - 23989529
Alignment:
Q  495 gaaaatgttacatgaacactctttaat-catacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| |||| || ||||||| | |||||| | || ||| |||| ||||||||| ||||||| |||||||||||| |||||    
T  23989623 gaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaaccacacttt 23989529  T

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Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 582
Target Start/End: Complemental strand, 50448359 - 50448272
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||||||||||||||||| |  ||||| | |||||||| |  ||| |||| ||||||||| |||| ||||||| |||||||    
T  50448359 gaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaacca 50448272  T

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Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 750404 - 750311
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||| ||||||| |||   || ||||||| |||||||| |||||| || | |||||||||  ||||||||||||| ||||| |||||    
T  750404 gaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaaccacacttt 750311  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 4401329 - 4401422
Alignment:
Q  496 aaaatgttacatgaacactctttaat-catacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||| |||||||||||||||| || | |||||   |||||||| |||||| ||||  |||||||| |||| ||||||||||||||| |||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaaccacacttt 4401422  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 7447828 - 7447919
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||  ||||| || |||| || |||||||| |||||| ||||  ||||||||  ||| ||||||||||||||| |||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctcacaaccacacttt 7447919  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 588
Target Start/End: Original strand, 4888085 - 4888137
Alignment:
Q  536 tacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||| |||| ||||||||| |||| || |||||||||||| |||||    
T  4888085 tacatcccatgtattagggatattttggtaagtttatctcacaaccacacttt 4888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 31513288 - 31513385
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31513288 gaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 31513385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 31408732 - 31408635
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctct 31408635  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 40236920 - 40237017
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||| ||||| |||| ||||||||||||||||| |||||||    
T  40236920 gaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctct 40237017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 24280695 - 24280598
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||| ||   ||||||| ||||||||||||||||| || |||||||||    
T  24280695 gaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctct 24280598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 27535330 - 27535233
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||  |||||  |||| || ||||| |||| ||||||||||||| |||||||||||    
T  27535330 gaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctct 27535233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 10573751 - 10573843
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||||| |||||| |||| | ||||||| |||||||||||||||||||| |||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacacttt 10573843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 33384871 - 33384969
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccc-tattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||   ||||||||||||||| ||||||| |  |||||||||| ||| ||||| ||||||||||||||||| ||||||||||||    
T  33384871 gaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctct 33384969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 35069722 - 35069815
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||||||||| || ||||||  |||||||| | |||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  35069722 gaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacacttt 35069815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 4638297 - 4638205
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||  |||| |||||||| | |||||||| |||||  |||| ||||||||| |||| |||||||||||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatacttt 4638205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 497 - 588
Target Start/End: Complemental strand, 26898499 - 26898408
Alignment:
Q  497 aaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||  |||| |||||||||| ||||||||| ||||| |||| ||||||||| |||| ||||||| ||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaaccacacttt 26898408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 5015396 - 5015489
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||||||||| |  ||||| | |||||||| | |||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  5015396 gaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacacttt 5015489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 24001111 - 24001018
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  24001111 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 24001018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 42538530 - 42538437
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  42538530 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 42538437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 43317444 - 43317541
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||||  |||| |||||||||  ||||||||||| |||| ||| |||||||||  |||||||||||||||| || |||| ||||    
T  43317444 gaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaatcacacttactct 43317541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 9216303 - 9216389
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||||||||||| ||||| || || | ||||||||||| |||||||||||  |||||||| |||| |||||||||||||||    
T  9216303 gaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcacaacca 9216389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 592
Target Start/End: Complemental strand, 5194335 - 5194233
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttc 589  Q
    |||| |||||||||||||||||||  |||| |||||||||  |||||||| || |||  |||||||||||||  |||||||||||||||| || |||| |    
T  5194335 tttaggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaatcacacttac 5194236  T
Q  590 tct 592  Q
    |||    
T  5194235 tct 5194233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 495 - 561
Target Start/End: Original strand, 39998409 - 39998475
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatatttt 561  Q
    |||||||||||||||||||  |||||||||||| ||||||||||| |||||| |||| |||||||||    
T  39998409 gaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 32029908 - 32029823
Alignment:
Q  503 tacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||| |||||| |||| || ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| ||||||| |||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaaccacacttt 32029823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 43343722 - 43343630
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||   |||| |  |||||||||||||||| |||||| |||| |||||||||  ||| ||||||||||||||| |||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacacttt 43343630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 44326180 - 44326272
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| ||||| ||||| ||||||| || |||||||| | |||  |||| ||||||||| |||| ||||||||||||||| |||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 44326272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 44417032 - 44416940
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||   |||| |  |||||||||||||||| |||||| |||| |||||||||  ||| ||||||||||||||| |||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacacttt 44416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 5811023 - 5810930
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||| ||| ||||| || ||||||| |||||||| || ||  |||| |||||||||  ||| ||||||||||||||| |||||    
T  5811023 gaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaaccacacttt 5810930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 41861675 - 41861770
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcatta-ag-gatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |||||||||| ||| |||| || ||| |||| || |||||||| |||| || |||||||||||| |||||    
T  41861675 gaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaaccacacttt 41861770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 42972853 - 42972940
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||| ||||||  ||||| || ||||| | |||||||| | |||| |||| ||||||||| |||| |||||||||||||||    
T  42972853 gaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 42972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 16180454 - 16180363
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| |||||  |||| || ||||||| |||||||| |||| | ||||   ||||||| |||||||||||||||||||| |||||    
T  16180454 aaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaaccacacttt 16180363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 532 - 580
Target Start/End: Complemental strand, 38160641 - 38160593
Alignment:
Q  532 attgtacatcccatgcattaaggatattttagtaaattcatctcacaac 580  Q
    |||||||| |||||| |||| |||||||||||||| |||||||||||||    
T  38160641 attgtacaccccatgtattagggatattttagtaacttcatctcacaac 38160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 588
Target Start/End: Complemental strand, 27393344 - 27393266
Alignment:
Q  510 acactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||| ||||| || |||| |||||||||||  | ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaagttcatctcacaaccacacttt 27393266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 45326021 - 45326114
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||| |||||||| |||||  |||| ||||||| |  |||||||| |||||  |||| ||||||||| |||| |||||||||||| || |||||    
T  45326021 gaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaatcacacttt 45326114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 17619251 - 17619154
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17619251 gaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 17619154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 490 - 592
Target Start/End: Original strand, 32728353 - 32728455
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttc 589  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  32728353 tttaggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttc 32728452  T
Q  590 tct 592  Q
    |||    
T  32728453 tct 32728455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 711961 - 712058
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  711961 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctct 712058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 55272475 - 55272378
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55272475 gaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 55272378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 3756344 - 3756252
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt 3756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 496 - 584
Target Start/End: Original strand, 35037007 - 35037095
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccata 584  Q
    |||||||||||||| ||| |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccata 35037095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 46827805 - 46827708
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||| |  |||| ||||||| ||||||||| |||| |||||||    
T  46827805 gaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctct 46827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 48435678 - 48435585
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||| ||||||||||||||  |||||||| ||||||||||||||| ||||||||||| ||| || || ||||||||||||||||| ||||||||    
T  48435678 gaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatacttt 48435585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 592
Target Start/End: Original strand, 41878405 - 41878504
Alignment:
Q  493 atgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||| || || ||||| |||||||||  ||| ||||||||||||||| || ||||||    
T  41878405 atgaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctct 41878504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 495 - 582
Target Start/End: Complemental strand, 55966445 - 55966358
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||||| ||||| ||||| ||||||| || ||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  55966445 gaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 495 - 581
Target Start/End: Complemental strand, 28982921 - 28982835
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacc 581  Q
    ||||||||||||||||||| ||||| |  ||||||||||||||||||||||  |||| ||||||||| |||| ||||||||||||||    
T  28982921 gaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 960969 - 960872
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| || || ||||| ||| ||||| |||||||||||| | || | ||||||||||    
T  960969 gaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctct 960872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 28988474 - 28988571
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||| |||||||||  |||||||| |||||||| || ||| |||||  ||||||||||||| ||||| |||||||||    
T  28988474 gaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctct 28988571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 592
Target Start/End: Original strand, 38851515 - 38851611
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||| |  ||||||||||||| | || ||||||  |||||||||| ||| |||||  |||||||||||||||||||||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctct 38851611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 574
Target Start/End: Complemental strand, 49229768 - 49229684
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatct 574  Q
    |||| |||||||||| |||||||  |||||||||||||||||||||||||   ||||||||||||||||| | ||||||||||||    
T  49229768 tttaggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 497 - 588
Target Start/End: Complemental strand, 23204875 - 23204784
Alignment:
Q  497 aaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||||||| || |||| || ||||||||||| ||| |||| ||||||||| |||| ||||| ||||||||| |||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcacaaccacacttt 23204784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 27864565 - 27864658
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| |||||  |||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  27864565 gaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 27864658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 33703142 - 33703235
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  |||| | ||||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  33703142 gaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 33703235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 45490412 - 45490319
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||||  |||| | ||||| || |||||||| | |||| |||| ||||| |||||||||||||||||||||||| |||||    
T  45490412 gaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacacttt 45490319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 48463549 - 48463456
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| |||||  |||| |||||||    ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||    
T  48463549 gaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatacttt 48463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 27893940 - 27893848
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| |||||  |||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacacttt 27893848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 495 - 582
Target Start/End: Complemental strand, 1771365 - 1771278
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||||||||||| ||||| || ||||||| |||||||| |||||| ||||  ||||||||  ||| |||||||||||||||    
T  1771365 gaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaacca 1771278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 23035981 - 23036074
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||   ||||| || |||||||||||||||| || ||  |||| ||||||||| |||| ||||||||||||||| |||||    
T  23035981 gaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacacttt 23036074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 25051694 - 25051787
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||| |||||||||| ||||| || ||||||| |||||||| || ||| |||| ||||||||| |||| |||||||||||| || |||||    
T  25051694 gaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaatcacacttt 25051787  T

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Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 12496957 - 12497050
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||| |||||||| ||||| || ||||| | ||||||||||||||| ||||  |||||||| |||| ||||||| |||| || |||||    
T  12496957 gaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacacttt 12497050  T

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Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 19879987 - 19880052
Alignment:
Q  527 accctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||| |||||  |||| ||| ||||| ||||||||||||||||| ||||||||||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctct 19880052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 27316812 - 27316719
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||| | |||||| ||||| || ||||||  ||| |||| |||||| |||||||||||||| |||| ||||||||| ||||| |||||    
T  27316812 gaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacacttt 27316719  T

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Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 27550310 - 27550403
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||| | |||||||| | |||| |||| ||||||||| |||| ||||||| ||||||| |||||    
T  27550310 gaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaaccacacttt 27550403  T

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Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 41327641 - 41327545
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||  |||| ||||| ||| |||||| |||||||| |  ||||| || ||| ||||| |||||||||||||||| ||| |||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctct 41327545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 588
Target Start/End: Original strand, 21687001 - 21687100
Alignment:
Q  489 atttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||| ||||||||||||||||||  ||||| |  ||||||| ||| ||||||  ||| ||||   |||||||||||| ||||||||| |||||||||||    
T  21687001 atttaggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaagttcatctcataaccatacttt 21687100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 582
Target Start/End: Complemental strand, 43514784 - 43514698
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    |||||||||||||||||| ||||| || ||||| | ||||||||   |||| |||| || |||||| |||| |||||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 35017734 - 35017826
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || || | |  |||||||| |||||| || | ||||||||| |||| ||||||||||||||| |||||    
T  35017734 gaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgtat-agggatattttggtaagttcatctcacaaccacacttt 35017826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 41847972 - 41848069
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||| |||||  ||||  ||| |||||  |||||||| |||||||||||  || ||||| | ||||||||| |||||||| |||||||||    
T  41847972 gaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctct 41848069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 43949900 - 43949807
Alignment:
Q  496 aaaatgttacatgaacactctttaat-catacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||| ||||||||||| |||| || | | ||||  |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 43949807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 39631102 - 39631195
Alignment:
Q  496 aaaatgttacatgaacactctttaat-catacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||| ||||||||| | |||| || | ||||||  |||||||| | |||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacacttt 39631195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 31680904 - 31680996
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||| | |||||  |||| |||||||  | |||||||| ||| |  |||| ||||||||| |||| ||||||||||||||| |||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaaccacacttt 31680996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 592
Target Start/End: Complemental strand, 56215955 - 56215899
Alignment:
Q  536 tacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||| ||||||||  |||||||| | ||||| |||||||||||| |||||||||    
T  56215955 tacatcctatgcattagcgatattttggaaaatttatctcacaaccacactttctct 56215899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 45817 - 45721
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctct 45721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 496 - 592
Target Start/End: Original strand, 27441544 - 27441640
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctct 27441640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 33242404 - 33242501
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||||  |||||||||||||| ||||||||| |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||    
T  33242404 gaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctct 33242501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 33253914 - 33254007
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||| ||| || || ||||||||||||||||| ||||||||    
T  33253914 gaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatacttt 33254007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 3213401 - 3213494
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| ||||| ||||| ||||||| |  |||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||    
T  3213401 gaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatacttt 3213494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 13743320 - 13743227
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||||  |||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  13743320 gaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 13743227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 13748820 - 13748727
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||||  |||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  13748820 gaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 13748727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 30014344 - 30014437
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || ||| ||||||||||| |||| | ||||||| |||| |||||||||||||||||||||    
T  30014344 gaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatacttt 30014437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 24204085 - 24203993
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||  |||| || ||||||||||||||||  ||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaaccacacttt 24203993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 7273434 - 7273341
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||||| ||||||||| |||||| ||||  |||||||| |||| |||||||||||| || |||||    
T  7273434 gaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaatcacacttt 7273341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 7367550 - 7367643
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||| |||||||   |||| |||||||||  ||||||||||||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  7367550 gaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacacttt 7367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 9698432 - 9698339
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  9698432 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 9698339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 21279930 - 21280023
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||  | |||| |||||||||| |||| ||||||||| |||||||||||||||||||| |||||    
T  21279930 gaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacacttt 21280023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 26670108 - 26670015
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||  |||||||| | |||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  26670108 gaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacacttt 26670015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 21293776 - 21293683
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| ||||| ||||| |||||||    | |||||| |||||| |||||||||||||| |||||||||| ||||||||| |||||    
T  21293776 gaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacacttt 21293683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 26466800 - 26466893
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| ||||| ||||| || ||||||| ||||||||  ||||| |||| || |||||| |||| ||||||||||||||| |||||    
T  26466800 gaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacacttt 26466893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 31109321 - 31109224
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||| || ||| |||| |||||||| || |||||||||  |||||||| || || |||| | |||||||    
T  31109321 gaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctct 31109224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 30735984 - 30736076
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| |||| || ||||||| |||||||| | |||| ||||  |||||||| |||| |||||||||||| || |||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaatcacacttt 30736076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 7292748 - 7292841
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| ||||||  |||| |||||||||  ||| |||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  7292748 gaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 7292841  T

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Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 10457991 - 10457894
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  10457991 gaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctct 10457894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 9434125 - 9434222
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||| ||||| |||| |||||||||||||||||||||||||    
T  9434125 gaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 9434222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 4190364 - 4190267
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |  ||| ||||  |||||||| ||||||||||||||||||||||||||||||    
T  4190364 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctct 4190267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 51757594 - 51757691
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||| | ||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  51757594 gaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctct 51757691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 52628076 - 52627979
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  52628076 gaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctct 52627979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 488 - 592
Target Start/End: Original strand, 25996262 - 25996366
Alignment:
Q  488 aatttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactt 587  Q
    |||||| ||||||||||||||||||| ||||||||||||| | ||||||||| |||||  |||||||| ||||| |||||||||||||||||||||| ||    
T  25996262 aatttaggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattt 25996361  T
Q  588 tctct 592  Q
    |||||    
T  25996362 tctct 25996366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 34791830 - 34791927
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| | | ||||||||| ||| |||||| ||| |||||||||||||||||||||||||    
T  34791830 gaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctct 34791927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 53581956 - 53581864
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||| ||| |||| |||||||||  ||| ||||||||||||||| |||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaaccacacttt 53581864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 40480750 - 40480843
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |||||  ||| ||||||||||| ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacacttt 40480843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 45127027 - 45126934
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| ||||| ||||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  45127027 gaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 45126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 42100689 - 42100776
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||||||||||| ||||| || ||||||  |||||||| |||||| |||| ||||||||| |||| |||||||||||||||    
T  42100689 gaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 42100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 25413682 - 25413775
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||| |||||||| |  ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  25413682 gaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaaccacacttt 25413775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 40808866 - 40808959
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| |||||  |||| || ||||||| |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  40808866 gaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 40808959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 46941054 - 46941147
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| |  |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  46941054 gaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 46941147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 54237097 - 54237190
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 54237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 54246247 - 54246154
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||| |||||||| || ||| ||||  |||||||| |||| ||||||||||||||| |||||    
T  54246247 gaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacacttt 54246154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 24688501 - 24688408
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||| | |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  24688501 gaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 24688408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 36150131 - 36150224
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||| || ||||| |||||||||| ||| |||| || ||| || | ||||||||| |||| ||||||||||||||| |||||    
T  36150131 gaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacacttt 36150224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 42394518 - 42394425
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||  | |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 42394425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 51249357 - 51249406
Alignment:
Q  543 catgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctcacaaccacactttctct 51249406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 53273783 - 53273690
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||| |||||||   |||| || || |||  ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||    
T  53273783 gaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatacttt 53273690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 47191124 - 47191032
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||  |||||||| |||||| ||||  ||||||||  ||| ||||||||||||||| |||||    
T  47191124 gaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcacaaccacacttt 47191032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 27748565 - 27748657
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||  |||| |||||||||  ||| |||| |  ||| |||| ||||||||| |||| ||||||||||||| |||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatacttt 27748657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 548 - 588
Target Start/End: Original strand, 52629882 - 52629922
Alignment:
Q  548 attaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||| |||| ||||||||||||||| |||||    
T  52629882 attaaggatatttttgtaagttcatctcacaaccacacttt 52629922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 490 - 592
Target Start/End: Complemental strand, 18066822 - 18066720
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttc 589  Q
    |||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  18066822 tttaggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttc 18066723  T
Q  590 tct 592  Q
    |||    
T  18066722 tct 18066720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 35181517 - 35181614
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||||||||||||||    
T  35181517 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 35181614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 34304789 - 34304886
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||||||||||||||    
T  34304789 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 34304886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 495 - 590
Target Start/End: Complemental strand, 16358933 - 16358837
Alignment:
Q  495 gaaaatgttacat-gaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttct 590  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttct 16358837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 16603725 - 16603628
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||| |||||||||||| || ||||| ||||||||||||||||||||||||| ||||    
T  16603725 gaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactct 16603628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 33630091 - 33629995
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||| |||||| |||||||||||||||  |||||||| || |||||||| ||| |||||||||| ||||||||||||| |||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctct 33629995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 2546997 - 2547090
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||||||||| |  ||||| | |||||||| | |||| |||| |||||||||||||| ||||||||||||||| |||||    
T  2546997 gaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaaccacacttt 2547090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 19386669 - 19386567
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcc-----catgcattaaggatattttagtaaattcatctcacaaccatactttc 589  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| | |     ||||||||||| || ||||  ||||||||||||||||| ||||||||    
T  19386669 gaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactatactttc 19386570  T
Q  590 tct 592  Q
    |||    
T  19386569 tct 19386567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 5754904 - 5754997
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||||  |||| || |||| || ||||||||||||||  |||| ||||||||| |||| ||||||||||||||| |||||    
T  5754904 gaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacacttt 5754997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 11582767 - 11582860
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  11582767 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 11582860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 29705363 - 29705456
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||||| |||||||| |||||| |||| |||||||||  ||| ||||||||||||||| |||||    
T  29705363 gaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacacttt 29705456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 36743582 - 36743489
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  36743582 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 36743489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 29801048 - 29800956
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| |||||  |||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 29800956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 42295197 - 42295289
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||| ||||| || ||||||  ||||||||  ||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacacttt 42295289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 42699259 - 42699351
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||| ||||| || ||||||| |||||||| |  ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaaccacacttt 42699351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 580
Target Start/End: Original strand, 1375543 - 1375628
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaac 580  Q
    |||||| ||||||||||||  |||| |||||||||| |||||||| |||||  |||| ||||||||| ||||||| ||||||||||    
T  1375543 gaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaac 1375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 20148762 - 20148854
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| ||||| ||||| ||||||| || |||||||| | |||  |||| ||||||||| |||| ||||||||||||||| |||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 20148854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 26125637 - 26125729
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| ||||| ||||| |||||||  | |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 26125729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 45397317 - 45397404
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacca 582  Q
    ||||||||||| ||||||| ||||| || ||||||| ||| |||| || ||| |||| ||||||||| |||| |||||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaacca 45397404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 31384672 - 31384758
Alignment:
Q  502 ttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| ||||| || ||||  |||||||||| |||||| |||| | ||||||| |||| ||||||||||||||| |||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacacttt 31384758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 588
Target Start/End: Complemental strand, 42197539 - 42197441
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||| |||||||||||||||||||  |||| || ||||||| |||| |||  | ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  42197539 tttaggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaaccacacttt 42197441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 30660841 - 30660748
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  |||| || |||||||| || ||| |||| ||||||||| |||| ||||||| ||||||| |||||    
T  30660841 gaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacacttt 30660748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 581
Target Start/End: Complemental strand, 30912660 - 30912575
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaacc 581  Q
    |||||||||||||||||| ||||| || ||||||| ||||||||   |||| |||| || |||||| |||| ||||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 548 - 592
Target Start/End: Complemental strand, 10678198 - 10678154
Alignment:
Q  548 attaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  10678198 attaaggacattttggtaaattcatctcacaaccatactttctct 10678154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 2166062 - 2165969
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||| ||||||||||||  |||| || ||||||| |||||| | |||||| ||||  |||||||| |||| ||||||||| ||||| |||||    
T  2166062 gaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataaccacacttt 2165969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 16803969 - 16804066
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||  ||| |||||||||||||||||||||||||    
T  16803969 gaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctct 16804066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 16843251 - 16843348
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||  ||| |||||||||||||||||||||||||    
T  16843251 gaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctct 16843348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 43114558 - 43114655
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||||||||||||||    
T  43114558 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 43114655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 966933 - 966836
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |  |||| ||||||||||||||||| ||||||||||||    
T  966933 gaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctct 966836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 18491706 - 18491803
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||||    
T  18491706 gaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactct 18491803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 11825752 - 11825656
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||| ||||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctct 11825656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 41282072 - 41281976
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||  ||| |||||||||||||||||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctct 41281976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 12415559 - 12415462
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||| ||||| |||| || ||||||||||||||||||||||    
T  12415559 gaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctct 12415462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 12427619 - 12427522
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||| ||||| |||| || ||||||||||||||||||||||    
T  12427619 gaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctct 12427522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 4299518 - 4299422
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||| || ||||| ||||||||||||||||| ||||||| ||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactct 4299422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 34895840 - 34895747
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||| ||||||||||||||  |||||||| ||||||||||||||| ||||||||||| ||| || || ||||||||||||||||| ||||||||    
T  34895840 gaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatacttt 34895747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 496 - 579
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaa 579  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||| ||||| |||| ||||||||||||    
T  6518566 aaaatgttacatgaacac-ctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 1750415 - 1750508
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||| |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  1750415 gaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacacttt 1750508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 34817875 - 34817778
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||| ||| |||||  |||||||| |||||||| || | | ||||| |||||||||||||||||||| |||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctct 34817778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 518 - 592
Target Start/End: Complemental strand, 4452026 - 4451952
Alignment:
Q  518 taatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||| | ||||||||| |  |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctct 4451952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 592
Target Start/End: Original strand, 14285672 - 14285774
Alignment:
Q  490 tttatgaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttc 589  Q
    |||| |||||| |||||  ||||| ||||||||||||||||||||||||| || ||  ||||| |||||||| |||||||||||||| |  |||||||||    
T  14285672 tttaggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttc 14285771  T
Q  590 tct 592  Q
    |||    
T  14285772 tct 14285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 4764825 - 4764732
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| |||||  |||| || |||||||||||||||| |||||| ||||   ||||||| |||||||||||||||||||| |||||    
T  4764825 gaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacacttt 4764732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 12302352 - 12302259
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||||| |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  12302352 gaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacacttt 12302259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 13780834 - 13780737
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||| |||||  |||| ||| |||||  |||||||| ||||| ||||| |||||||||  ||||||||||||||||||| |||||||||    
T  13780834 gaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctct 13780737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 30838633 - 30838726
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  |||| | ||||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  30838633 gaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 30838726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 16096748 - 16096841
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||| ||| |||| |||||| |||| ||||||||| || | || |||||||||||| |||||    
T  16096748 gaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacacttt 16096841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 19047158 - 19047251
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||  | |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 19047251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 590
Target Start/End: Original strand, 42026768 - 42026865
Alignment:
Q  495 gaaaatgttacatgaacactc--tttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttct 590  Q
    ||||||||||||||||||| |  |||| |||||||  | ||||||||||||  |||||| ||||||||| | |||||||||||||||| | |||||||    
T  42026768 gaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaactacactttct 42026865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 592
Target Start/End: Complemental strand, 12531741 - 12531665
Alignment:
Q  515 ctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    |||||||||||||||| |||||||| | || |||||| ||   |||| ||||||||||||||||||||||||||||||    
T  12531741 ctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctct 12531665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 43335862 - 43335777
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaac 580  Q
    |||||||||| |||||||   |||| || ||||||  ||||||||||||||| |||| ||||||||| |||| |||||||||||||    
T  43335862 gaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 43335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 588
Target Start/End: Complemental strand, 43490499 - 43490407
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||||||||| ||||| || |||| || ||||||||  | ||| |||| ||||||||| |||| ||||||||| ||||| |||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacacttt 43490407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 590
Target Start/End: Complemental strand, 8896681 - 8896587
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttct 590  Q
    |||||||||||||||||| ||||| ||| |||  | |||||||| || || || || | ||||||| ||||||||||||||||| || |||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaatcacactttct 8896587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Original strand, 17208075 - 17208172
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  17208075 gaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctct 17208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 30622817 - 30622721
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  30622817 gaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctct 30622721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 32473493 - 32473396
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  32473493 gaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctct 32473396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 7617134 - 7617227
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |||||||| | ||| |||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  7617134 gaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 7617227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 2614748 - 2614655
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || |||| || |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  2614748 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 2614655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 18033983 - 18034076
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||| | |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  18033983 gaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacacttt 18034076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 22512306 - 22512399
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||| | ||||||||  ||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  22512306 gaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacacttt 22512399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 33801470 - 33801563
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||  ||||| |  ||||||| ||||||||  ||||| |||| |||||||||||||| ||||||||||||||| |||||    
T  33801470 gaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaaccacacttt 33801563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 38470580 - 38470673
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||| ||||| ||||| |||||||  | |||||||| |||||| |||||||||||||| |||||||||| |||||| || |||||    
T  38470580 gaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaatcacacttt 38470673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 41334762 - 41334669
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |||||||||  ||| |||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  41334762 gaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 41334669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 5256997 - 5257089
Alignment:
Q  496 aaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||||| |||||  |||| ||||||| || |||||||| |||||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacacttt 5257089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 551
Target Start/End: Complemental strand, 33855142 - 33855086
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcatta 551  Q
    ||||||||||||||||||| ||||| || ||||||| |||||||| |||||| ||||    
T  33855142 gaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtatta 33855086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 495 - 592
Target Start/End: Complemental strand, 35555 - 35458
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatactttctct 592  Q
    ||||||||||||| |||||  |||||||||||||| ||||||||| ||||||||||| ||| || || ||||||||||||||||||||||||||||||    
T  35555 gaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctct 35458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 11252 - 11345
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||| |||||  |||| ||||||||| |||| ||||||||||||||| |||||    
T  11252 gaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacacttt 11345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 14287 - 14194
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||||| ||||||||||| ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  14287 gaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacacttt 14194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 24615 - 24522
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| |  ||||||| ||||||||||| ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  24615 gaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacacttt 24522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 686 - 779
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||||  |||||||| | |||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  686 gaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacacttt 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 495 - 588
Target Start/End: Original strand, 112656 - 112749
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    ||||||||||||||||||| ||||| || ||||  | |||||||| || ||| |||| ||||||||| |||| ||||||||||||||| |||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttt 112749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 23520 - 23427
Alignment:
Q  495 gaaaatgttacatgaacactctttaatcatacaccctattgtacatcccatgcattaaggatattttagtaaattcatctcacaaccatacttt 588  Q
    |||||||||| |||||||| ||||| || ||||| | ||||||||||||||| ||||  |||||||| |||| ||||||| |||| || |||||    
T  23520 gaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacacttt 23427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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