View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4628-Insertion-7 (Length: 524)

Name: NF4628-Insertion-7
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4628-Insertion-7
NF4628-Insertion-7
[»] chr4 (1 HSPs)
chr4 (6-524)||(27575412-27575905)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 6 - 524
Target Start/End: Original strand, 27575412 - 27575905
Alignment:
Q  6 caataatgtgatctacagtatcactttgtactctttcacaagttgccaaatcaggggtgaccaacagaccattattctacgagagttgttagttttcttt 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27575412 caataatatgatctacagtatcactttgtactctttcacaagttgccaaatcaggggtgaccaacagaccattattctacgagagttgttagttttcttt 27575511  T
Q  106 tcatagtatgattatgtttatatgtttatatgtttaattgtccattaaattttaaacagaagattgtggaccgcataaccacttagagtatagtcaaatt 205  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27575512 tcatagtatgattatgtttatatgttta--------attgtccattaaattttaaacagaagattgtggaccgcataaccacttagagtatagtcaaat- 27575602  T
Q  206 aattgatacatgaaattaattgaaatatgatccaatggtcctccaagcaggagttcgtacttcacatgcaatgttgaaactttgaaagcatatcttatgc 305  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27575603 ----------------taattgaaatatgatccaatggtcctccaagcaggagttcgtacttcacatgcaatgttgaaactttgaaagcatatcttatgc 27575686  T
Q  306 aatcacgtggaaattaaagtgcttttcgttttaaattttctactacagttattctattattggaccactttatgacttccaaggaggatgaggagtactt 405  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27575687 aatcacgtggaaattaaagtgcttttcgttttaaattttatactacagtgattctattattggaccactttatgacttccaaggaggatgaggagtactt 27575786  T
Q  406 acaatatattgaagtcatgaaatgaactttattggcaaagcatgttttcttcatttctcagtatcaatttgaagcactattgactaaattgtcattgaga 505  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27575787 acaatatattgaagtcatgaagtgaactttattggcaaagcatgttttcttcatttctcagtatcaatttgaagcactattgactaaattgtcattgaga 27575886  T

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