View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628-Insertion-8 (Length: 521)
Name: NF4628-Insertion-8
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Original strand, 26105876 - 26106376
Alignment:
| Q |
8 |
gttgtgtggtattgtgttctttcttcaatatatattatcaatattatggtcaatttggacgttttgaggatatgctcaactttggatggtggatgaattt |
107 |
Q |
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| T |
26105876 |
gttgtgtggtattgtgttctt-cttcaatatatattatcaatattatggtcaatttggacattttgaggatatgctcaactttggatggtggatgaattt |
26105974 |
T |
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| Q |
108 |
gttgaggttacttacaagatcagtggagagacaatgctgtccttttctgtatgggaaaagtatgctggcaaggagcatttagcagattctattgggactt |
207 |
Q |
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| T |
26105975 |
gttgaggttacttacaagatcagtggagagacaatgctgtccttttctatatgggaaaagtatgctggcaaggagcatttagcagattctattgggactt |
26106074 |
T |
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| Q |
208 |
atgattgaagagttttggattttaaattttatttctattatttgtagaattgttttaataatcaatcaacatagcaaagtggcatcataatgtgannnnn |
307 |
Q |
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| T |
26106075 |
atgattgaagagttttggattttaaattttatttctattatttgtagaattgttttaat----aatcaacctagcaaagtggcatcataatgtga----t |
26106166 |
T |
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| Q |
308 |
nnnnnnnnnnataatcatgttattagtgtgaattgtaagtattttctaattttatcgatgactaatttctgtcggtcggaaatttgactaccaatcaata |
407 |
Q |
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| T |
26106167 |
tttttattttataatcatgttattagtgtgaattgcaagtattttctaattttatcgatgactaatttct----gtcggaaacttgactaccgatcaata |
26106262 |
T |
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| Q |
408 |
ttgatggatatgtttttccaatcata--tatttttccatcaacaaggttcaacccgagactttattgaaaggatccgaccaattttgatggatatgtttt |
505 |
Q |
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| T |
26106263 |
ttgatggatatgtttttccaatcatatttttttttccatcaacaaggttcaa--cgcgactttgttgaaagaatccgaccaattttgatggatatgtttt |
26106360 |
T |
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| Q |
506 |
tcccactcggataata |
521 |
Q |
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| T |
26106361 |
tcccactcggataata |
26106376 |
T |
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