View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4628-Insertion-9 (Length: 454)

Name: NF4628-Insertion-9
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4628-Insertion-9
NF4628-Insertion-9
[»] scaffold0019 (2 HSPs)
scaffold0019 (8-416)||(56317-56725)
scaffold0019 (419-454)||(56760-56795)
[»] chr6 (16 HSPs)
chr6 (31-349)||(28295777-28296095)
chr6 (31-349)||(28515978-28516296)
chr6 (31-394)||(28236287-28236650)
chr6 (49-349)||(28327354-28327654)
chr6 (49-349)||(28504990-28505290)
chr6 (31-346)||(28187227-28187541)
chr6 (40-349)||(28244704-28245013)
chr6 (68-284)||(29827843-29828059)
chr6 (148-334)||(28141407-28141596)
chr6 (163-283)||(28151099-28151219)
chr6 (225-283)||(26341723-26341781)
chr6 (164-261)||(26648365-26648462)
chr6 (164-261)||(26754333-26754430)
chr6 (170-261)||(26813426-26813517)
chr6 (225-283)||(28096668-28096726)
chr6 (298-342)||(29827770-29827814)
[»] scaffold0038 (2 HSPs)
scaffold0038 (31-394)||(36449-36812)
scaffold0038 (40-349)||(44866-45175)
[»] chr5 (1 HSPs)
chr5 (148-291)||(16692986-16693129)
[»] chr2 (1 HSPs)
chr2 (163-283)||(3281574-3281694)
[»] chr1 (1 HSPs)
chr1 (149-261)||(5921600-5921712)


Alignment Details
Target: scaffold0019 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 56317 - 56725
Alignment:
Q  8 tataagataagacgagagaaatgaaattattgcatttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcat 107  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  56317 tataagataagatgagagaaatgaaatcattgcatttaaacataccttgattgtcccacgcaactcgaatgatgtaaagtcactttgctgtagtttgcat 56416  T
Q  108 atagaaagtttcttcgggaaaatatcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56417 atagaaagtttcttcgggaaaatatcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctt 56516  T
Q  208 tggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56517 tggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaa 56616  T
Q  308 ttccaaatatataatttcaattttacttgatcccttaaagcggnnnnnnncacatatcgatacatgtgtatatgttatgaattgaaggttaaggataaat 407  Q
    ||||||||||||||||||||||| |||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  56617 ttccaaatatataatttcaatttcacttgatcccttaaagcggaaaaaaacacatatcaatacatgtgtatatgttatgaattgaaggttaaggataaat 56716  T
Q  408 attagttaa 416  Q
    |||||||||    
T  56717 attagttaa 56725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 454
Target Start/End: Original strand, 56760 - 56795
Alignment:
Q  419 ataaaccattcatggatattagtattattcacctta 454  Q
    ||||||||||||||||||||||||||||||||||||    
T  56760 ataaaccattcatggatattagtattattcacctta 56795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 349
Target Start/End: Original strand, 28295777 - 28296095
Alignment:
Q  31 aaattattgcatttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaat 130  Q
    |||| ||| |||||| ||||||||||||||||||| ||||| | |||||  |||||||||||||| |||| |||||||||||||||||||| ||| |||     
T  28295777 aaatcattacatttacacataccttcattgtgccatgcaacccaaatgaaataaagtcactttgctgtagcttgcatatagaaagtttctttgggcaaaa 28295876  T
Q  131 atcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaaca 230  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28295877 atcagatggtatgatccgtgaaggatatttaggccattccaatactctcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaaca 28295976  T
Q  231 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattt 330  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  28295977 ataagtgttttgaggttttgcatcttcttgagctcatctcccttccattctatcacctcttcctcagataacgggaattccaaatatataatttcaattt 28296076  T
Q  331 tacttgatcccttaaagcg 349  Q
     ||||||||||||||||||    
T  28296077 gacttgatcccttaaagcg 28296095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 349
Target Start/End: Complemental strand, 28516296 - 28515978
Alignment:
Q  31 aaattattgcatttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaat 130  Q
    |||| ||| |||||| ||||||||||||||||||| ||||| | |||||  |||||||||||||| |||| |||||||||||||||||||| ||| |||     
T  28516296 aaatcattacatttacacataccttcattgtgccatgcaacccaaatgaaataaagtcactttgctgtagcttgcatatagaaagtttctttgggcaaaa 28516197  T
Q  131 atcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaaca 230  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28516196 atcagatggtatgatccgtgaaggatatttaggccattccaatactctcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaaca 28516097  T
Q  231 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattt 330  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  28516096 ataagtgttttgaggttttgcatcttcttgagctcatctcccttccattctatcacctcttcctcagataacgggaattccaaatatataatttcaattt 28515997  T
Q  331 tacttgatcccttaaagcg 349  Q
     ||||||||||||||||||    
T  28515996 gacttgatcccttaaagcg 28515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 31 - 394
Target Start/End: Complemental strand, 28236650 - 28236287
Alignment:
Q  31 aaattattgcatttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaat 130  Q
    |||| ||| |||||| ||||||||||| ||||||||||||||| ||||||| || |||||||| |  |||||||||||| ||||||||||| ||| | |     
T  28236650 aaatcattacatttacacataccttcactgtgccacgcaactcaaatgatgaaaggtcactttcctttagtttgcatattgaaagtttctttgggcagaa 28236551  T
Q  131 atcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaaca 230  Q
    ||||||||||| || || ||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||    
T  28236550 atcagatggtatgatccttgaaggatatttaggccattccaatactctcaaactattaggaagataattaggacctttggaaaaggtaccattcttaaca 28236451  T
Q  231 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  28236450 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctatcacctcttcctcagatgacgggaattccaaatatataatttcaattt 28236351  T
Q  331 tacttgatcccttaaagcggnnnnnnncacatatcgatacatgtgtatatgttatgaattgaag 394  Q
     |||||||||||||||||||       ||| |||| |||||||||| |||| || |||||||||    
T  28236350 cacttgatcccttaaagcggaaaagaacacgtatcaatacatgtgtgtatgatacgaattgaag 28236287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 49 - 349
Target Start/End: Complemental strand, 28327654 - 28327354
Alignment:
Q  49 ataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaatatcagatggtacgaaccg 148  Q
    |||||||||||||||||| ||||||  |||||| ||||||||||| | |||| ||||||| |||| ||||||| |||||||||||||| |||||||||||    
T  28327654 ataccttcattgtgccacacaactcatatgatgaaaagtcactttcctgtagcttgcatacagaacgtttctttgggaaaatatcagacggtacgaaccg 28327555  T
Q  149 tgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttt 248  Q
    ||||||||||||| |||||||||||||||| | ||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28327554 tgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagctaccattcttaacaataagtgttttaaggttt 28327455  T
Q  249 tgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattttacttgatcccttaaagc 348  Q
    |||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28327454 tgcatcttcttgagttcatctcccttccaatctaccaccttttgctcagatgacgggaattccaaatatataatttcaattttacttgatcccttaaagc 28327355  T
Q  349 g 349  Q
    |    
T  28327354 g 28327354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 49 - 349
Target Start/End: Complemental strand, 28505290 - 28504990
Alignment:
Q  49 ataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaatatcagatggtacgaaccg 148  Q
    |||||||||||||||||| ||||||  |||||| ||||||||||| | |||| ||||||| |||| ||||||| |||||||||||||| |||||||||||    
T  28505290 ataccttcattgtgccacacaactcatatgatgaaaagtcactttcctgtagcttgcatacagaacgtttctttgggaaaatatcagacggtacgaaccg 28505191  T
Q  149 tgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttt 248  Q
    ||||||||||||| |||||||||||||||| | ||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28505190 tgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagctaccattcttaacaataagtgttttaaggttt 28505091  T
Q  249 tgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattttacttgatcccttaaagc 348  Q
    |||||||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28505090 tgcatcttcttgagttcatctcccttccaatctaccaccttttgctcagatgacgggaattccaaatatataatttcaattttacttgatcccttaaagc 28504991  T
Q  349 g 349  Q
    |    
T  28504990 g 28504990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 31 - 346
Target Start/End: Complemental strand, 28187541 - 28187227
Alignment:
Q  31 aaattattgcatttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaat 130  Q
    |||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  28187541 aaatcattacatttacacataccttcattgtgccacgcaactcaaatgatgtaaagtcactttgctgtagtttgcatatagaaagtttctttgggaaaa- 28187443  T
Q  131 atcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaaca 230  Q
    ||||||||||| || |||||||||||||||  ||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| ||||||||||||||    
T  28187442 atcagatggtatgacccgtgaaggatatttttgccattccaatactctcaaactgtttggaagatattttggaccattggaaaaggtaccattcttaaca 28187343  T
Q  231 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattt 330  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||| ||| |||||||| || ||| | ||||||||||||||||||||||||    
T  28187342 ataagtgttttgagcttttgcatcttctccagttcatctcccttccaatctactaccactttctcagatgacgagcattccaaatatataatttcaattt 28187243  T
Q  331 tacttgatcccttaaa 346  Q
     |||||||||||||||    
T  28187242 cacttgatcccttaaa 28187227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 40 - 349
Target Start/End: Complemental strand, 28245013 - 28244704
Alignment:
Q  40 catttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaatatcagatgg 139  Q
    |||||| ||||||||||||||||||| | ||| | |||||  |||||||||||||  |||| |||||||||||||||||||| ||| ||| |||||||||    
T  28245013 catttacacataccttcattgtgccatgaaacccaaatgaaataaagtcactttgttgtagcttgcatatagaaagtttctttgggcaaaaatcagatgg 28244914  T
Q  140 tacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgtt 239  Q
    || || | |||||||||||||| |||||||||||||||||| |||||| ||||||| ||| ||||| ||||||||| |||||||||||||||||||||||    
T  28244913 tatgaccggtgaaggatatttaggccattccaatactctcagactgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgtt 28244814  T
Q  240 ttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattttacttgatc 339  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||    
T  28244813 ttgaggttttccatcttcttcagttcatctccctcccaatctaccacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatc 28244714  T
Q  340 ccttaaagcg 349  Q
    ||||||||||    
T  28244713 ccttaaagcg 28244704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 284
Target Start/End: Complemental strand, 29828059 - 29827843
Alignment:
Q  68 caactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaatatcagatggtacgaaccgtgaaggatatttacgccat 167  Q
    |||||| |||||||||||| || ||    |||| |||||||||||||||||||| ||  ||| ||||  ||| |   || |||||||||||  | |||||    
T  29828059 caactcaaatgatgtaaagccatttccaggtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccat 29827960  T
Q  168 tccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcat 267  Q
    ||||| ||||| |||||||| ||||| |||| |||| || | ||||||| |||||| |  | |||||||||||||||||||| ||||||||| | |||||    
T  29827959 tccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctataataagtgttttgaggtttttcatcttcttcaattcat 29827860  T
Q  268 ctcccttccaatctacc 284  Q
    |||| ||||| ||||||    
T  29827859 ctcctttccattctacc 29827843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 334
Target Start/End: Complemental strand, 28141596 - 28141407
Alignment:
Q  148 gtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggtt 247  Q
    ||||||||||  |||||||||||| |||||| ||| | || |||||||| | | ||||||||||||||| |||  | |||| |||||  |||||||||||    
T  28141596 gtgaaggataactacgccattccagtactcttaaattatttggaagatgctcaagacctttggaaaagcgacctcttttaataataaaagttttgaggtt 28141497  T
Q  248 ttgcatcttcttgagttcatctcccttccaatctacca---cctctttctcacataacgggaattccaaatatataatttcaattttact 334  Q
    || ||||||||| | ||||||||| ||||| |||||||   | |||| || | | || ||| |||||| |||||||||||||||||||||    
T  28141496 ttccatcttctttaattcatctcctttccattctaccacttcttcttccttagacaatggggattccatatatataatttcaattttact 28141407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 28151219 - 28151099
Alignment:
Q  163 gccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgag 262  Q
    |||||||||||||||| ||||| || |||||||||  | ||   ||| |||||  || | | ||||||| ||||||||||||||||| |||||||||||     
T  28151219 gccattccaatactcttaaactatttggaagatgtacatgagggttgaaaaagaaactagttttaacaacaagtgttttgaggtttttcatcttcttgaa 28151120  T
Q  263 ttcatctcccttccaatctac 283  Q
    ||||||||| ||||| |||||    
T  28151119 ttcatctcctttccattctac 28151099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 26341723 - 26341781
Alignment:
Q  225 ttaacaataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctac 283  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||| |||||    
T  26341723 ttaacaacaagtgttttgaggtttttcatcttcttgaattcatctcctttccattctac 26341781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 26648462 - 26648365
Alignment:
Q  164 ccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttga 261  Q
    ||||| |||||||||||||||| | ||||||| |||| ||||||| |||||   |||||| | ||  |||||||||||||| |||  |||||||||||    
T  26648462 ccatttcaatactctcaaactgcttggaagatatttaagacctttagaaaaatgaccattttcaatgataagtgttttgagttttgtcatcttcttga 26648365  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 26754430 - 26754333
Alignment:
Q  164 ccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttga 261  Q
    ||||| |||||||||||||||| | ||||||| |||| ||||||| |||||   |||||| | ||  |||||||||||||| |||  |||||||||||    
T  26754430 ccatttcaatactctcaaactgcttggaagatatttaagacctttagaaaaatgaccattttcaatgataagtgttttgagttttgtcatcttcttga 26754333  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 26813517 - 26813426
Alignment:
Q  170 caatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttga 261  Q
    ||||||||||||| |  |||||||||| || |||||||| |||||   |||||| | || ||||||||||||||| |||  |||||||||||    
T  26813517 caatactctcaaagtactaggaagatgcttgggacctttagaaaattgaccattttcaataataagtgttttgagttttgtcatcttcttga 26813426  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 28096668 - 28096726
Alignment:
Q  225 ttaacaataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctac 283  Q
    ||||| ||||||||||| ||||||| ||||||||| | ||||||||| ||||| |||||    
T  28096668 ttaacgataagtgttttaaggtttttcatcttctttaattcatctcctttccactctac 28096726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 29827814 - 29827770
Alignment:
Q  298 ataacgggaattccaaatatataatttcaattttacttgatccct 342  Q
    |||| ||||||| |||||||||||||||||||| ||||| |||||    
T  29827814 ataatgggaatttcaaatatataatttcaatttgacttgttccct 29827770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 31 - 394
Target Start/End: Complemental strand, 36812 - 36449
Alignment:
Q  31 aaattattgcatttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaat 130  Q
    |||| ||| |||||| ||||||||||| ||||||||||||||| ||||||| || |||||||| |  |||||||||||| ||||||||||| ||| | |     
T  36812 aaatcattacatttacacataccttcactgtgccacgcaactcaaatgatgaaaggtcactttcctttagtttgcatattgaaagtttctttgggcagaa 36713  T
Q  131 atcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaaca 230  Q
    ||||||||||| || || ||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||    
T  36712 atcagatggtatgatccttgaaggatatttaggccattccaatactctcaaactattaggaagataattaggacctttggaaaaggtaccattcttaaca 36613  T
Q  231 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  36612 ataagtgttttgaggttttgcatcttcttgagttcatctcccttccaatctatcacctcttcctcagatgacgggaattccaaatatataatttcaattt 36513  T
Q  331 tacttgatcccttaaagcggnnnnnnncacatatcgatacatgtgtatatgttatgaattgaag 394  Q
     |||||||||||||||||||       ||| |||| |||||||||| |||| || |||||||||    
T  36512 cacttgatcccttaaagcggaaaagaacacgtatcaatacatgtgtgtatgatacgaattgaag 36449  T

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Target: scaffold0038; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 40 - 349
Target Start/End: Complemental strand, 45175 - 44866
Alignment:
Q  40 catttaaacataccttcattgtgccacgcaactcgaatgatgtaaagtcactttgccgtagtttgcatatagaaagtttcttcgggaaaatatcagatgg 139  Q
    |||||| ||||||||||||||||||| | ||| | |||||  |||||||||||||  |||| |||||||||||||||||||| ||| ||| |||||||||    
T  45175 catttacacataccttcattgtgccatgaaacccaaatgaaataaagtcactttgttgtagcttgcatatagaaagtttctttgggcaaaaatcagatgg 45076  T
Q  140 tacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgtt 239  Q
    || || | |||||||||||||| |||||||||||||||||| |||||| ||||||| ||| ||||| ||||||||| |||||||||||||||||||||||    
T  45075 tatgaccggtgaaggatatttaggccattccaatactctcagactgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgtt 44976  T
Q  240 ttgaggttttgcatcttcttgagttcatctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaattttacttgatc 339  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||    
T  44975 ttgaggttttccatcttcttcagttcatctccctcccaatctaccacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatc 44876  T
Q  340 ccttaaagcg 349  Q
    ||||||||||    
T  44875 ccttaaagcg 44866  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 16693129 - 16692986
Alignment:
Q  148 gtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggtt 247  Q
    ||||||||||| || ||||||| |  ||||| ||||| || ||||||||||| || ||||||||||||  ||||||||||| ||||||||||||||||||    
T  16693129 gtgaaggatatctatgccattcaagcactcttaaactatttggaagatgttttggtcctttggaaaagtgaccattcttaataataagtgttttgaggtt 16693030  T
Q  248 ttgcatcttcttgagttcatctcccttccaatctaccacctctt 291  Q
    |  |||||||||||  ||||| || ||||| || ||||| ||||    
T  16693029 tatcatcttcttgaactcatcacctttccattcaaccacttctt 16692986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 3281694 - 3281574
Alignment:
Q  163 gccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgag 262  Q
    ||||||||| |||| | ||||| ||||||||||||  | ||  ||||||||||  || | | ||||||||||||||||||||||||| |||||||||||     
T  3281694 gccattccagtacttttaaactattaggaagatgtacaagaggtttggaaaaggaactagttttaacaataagtgttttgaggtttttcatcttcttgaa 3281595  T
Q  263 ttcatctcccttccaatctac 283  Q
    ||||||||| ||||| |||||    
T  3281594 ttcatctcctttccactctac 3281574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 5921600 - 5921712
Alignment:
Q  149 tgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttt 248  Q
    |||||||||||| ||||||||||  | ||||||||| || ||||||| ||| |||| ||  |||||   ||||| | ||| ||| || ||| ||||||||    
T  5921600 tgaaggatatttccgccattccagaattctcaaactatttggaagatatttgggactttcagaaaaagcaccatgcctaataattagcgttctgaggttt 5921699  T
Q  249 tgcatcttcttga 261  Q
    | |||||||||||    
T  5921700 tccatcttcttga 5921712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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