View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628_low_1 (Length: 379)
Name: NF4628_low_1
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 44352973 - 44352633
Alignment:
| Q |
22 |
tcatctcatatcttacaacacattccctttcttcatcattctcctccgccgctaaaaacttctcaacaacccctcgcccatttcccgactattccccacg |
121 |
Q |
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| T |
44352973 |
tcatctcctatcttacaacacattccctttcttcatcattctcctccgccgctaaaaacttctcaacaacccctcgcccatttcccgactattccccacg |
44352874 |
T |
|
| Q |
122 |
aaatccttctatctccgacaccgacctcgtccgccacgtcaccactaccctcaaacgccgccatctcgaacccttccgccgcgttcttaaaccctacgaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44352873 |
aaatccttctatctccgacaccgacctcgtccgccgcgtaaccactaccctcaaacgccgccatctcgaacccttccgccgcgttcttaaaccctacgaa |
44352774 |
T |
|
| Q |
222 |
tctcgctttaaaccgtcccatctcatttgggttctcatcaacctcaaaaacgattacccacttgtcttaaaactcttcaactgggcaaaatcacaatctc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44352773 |
tctcgctttaaaccgtcccatctcatttgggttctcatcaacctcaaaaacgattacccacttgtcttaaacctcttcaactgggcaaaatcacaatctc |
44352674 |
T |
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| Q |
322 |
aacaacaatttcacccaactatagaatcactctgcattgtt |
362 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
44352673 |
aacaacaatttcacccaactctagaatcactctgcattgtt |
44352633 |
T |
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