View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4628_low_2 (Length: 335)
Name: NF4628_low_2
Description: NF4628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4628_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 318
Target Start/End: Original strand, 38137863 - 38138147
Alignment:
| Q |
33 |
ttagttatcaaattctaaacgttgcaattttattattctacttcatnnnnnnnnnnnnnnnnnattatcccttggtatgtgctcacaagccacaaccatc |
132 |
Q |
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| T |
38137863 |
ttagttatcaaattctaaacgttgcaattttattattctacttcattctctctctctctct--attatcccttggtatgtgctcacaagccacaaccatc |
38137960 |
T |
|
| Q |
133 |
atactcatagttttacattccaagaacaaagattttaccatcttatttctaggtttgattcaaaatattcatattatactgctatgttttcatggggtgt |
232 |
Q |
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| T |
38137961 |
atactcatagttttacattccaagaacaaagattttaccatcttatttctaggtttgattcaaaatattcatattatactgctatgttttcatggggtgt |
38138060 |
T |
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| Q |
233 |
taacaactttgaacatttgttttgttttaacaagaaatatttcattaaattgttgattttttaca-gtcacatgacacatcccaaat |
318 |
Q |
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| T |
38138061 |
taacaactttgaacatttgttttgttttaacaagaaatatttcattaaatttttgattttttacaggtcacatgacacgtccaaaat |
38138147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 10595469 - 10595421
Alignment:
| Q |
238 |
actttgaacatttgttttgttttaacaagaaatatttcattaaattgtt |
286 |
Q |
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| T |
10595469 |
actttgaacatttgttttgtttttaccagaaatatttcattaaattgtt |
10595421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 30224648 - 30224573
Alignment:
| Q |
114 |
ctcacaagccacaaccatcatactca-tagttttacattccaagaacaaagattttaccatcttatttctaggttt |
188 |
Q |
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| T |
30224648 |
ctcacaagccacaatcatcatactcgctatttttacctttcaagaacaaagatttcaccatcttctttctcggttt |
30224573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 41799932 - 41799985
Alignment:
| Q |
240 |
tttgaacatttgttttgttttaacaagaaatatttcattaaattgttgattttt |
293 |
Q |
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| T |
41799932 |
tttgatcatttgtcttgttttcactagaaatatttcattaaattgttgaatttt |
41799985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 3380546 - 3380601
Alignment:
| Q |
239 |
ctttgaacatttgttttgttttaacaagaaatatttcattaaattgttgatttttt |
294 |
Q |
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| T |
3380546 |
ctttgaacatttgttttgtttttaccagaaatattttattaaattgttgaattttt |
3380601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 2941802 - 2941867
Alignment:
| Q |
244 |
aacatttgttttgttttaacaagaaatatttcattaaattgttgattttttacagtcacatgacac |
309 |
Q |
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| T |
2941802 |
aacatttgttttgtttttaccagaaatatttcattaaattgctgttttcttaccatcacaggacac |
2941867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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