View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4629-Insertion-1 (Length: 1115)
Name: NF4629-Insertion-1
Description: NF4629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4629-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 656 - 1103
Target Start/End: Complemental strand, 53396390 - 53395922
Alignment:
| Q |
656 |
atattattacaattaactttttatgataatcacttgattttctcttcttcct------------tgcaatcatcttcaatctcagattcttgtttaggac |
743 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53396390 |
atattattacaattaactttttatgataatcacttgattttctcttcttcctctgatccttccttgcaatcatcttcaatctcagattcttgtttaggac |
53396291 |
T |
|
| Q |
744 |
tatcactatcaagtgcccttttttcttgctcttcatcttcatcatcatcttcatctccaaccccattattttccctcctcacaacaccaccattttttgc |
843 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53396290 |
tatcactatcaagtgcccttttttcttgctcttcatcttcaacatcatcttcatctccaaccccattattttccctcctcacaacactaccattttttgc |
53396191 |
T |
|
| Q |
844 |
attcctctctgctctcaccttcaaaatctccaacaattcatccacagctttctctttcttcctccgattcttaatcaaaacctcacttatatcagctggt |
943 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53396190 |
attcctctctgctctcaccttcaaaatctccaacaattcatccacagctttctctttcttcctccgattcttaatcaaaacctcacttatatcagctggt |
53396091 |
T |
|
| Q |
944 |
gtcatccttgccatttcaacaacttcctccaattccttcaaaacagagtcatccaaatc-acaccctcttcacaccc--aataattcttcaac-aaattt |
1039 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
53396090 |
gtcatccttgccatttcaacaacttcctccaattccttcaaaacagagtcatccaaatcaacaccctcttcacaccccaaataattcttcaacaaaattt |
53395991 |
T |
|
| Q |
1040 |
tcaaagcttgtatcg-aca--tactcatg-aaatatgcatat-cattcctccactcctcaacaaagcag |
1103 |
Q |
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||||||||||||||| ||| ||||||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
53395990 |
tcaaagcttgtatcgaacaataactcatgaaaatatgcatatccattctcccactcctcaacaaagcag |
53395922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 636 - 923
Target Start/End: Original strand, 18845596 - 18845894
Alignment:
| Q |
636 |
ttagaaacaagtcttcaataatattattacaattaactttttatgataatcacttgattttctcttcttcct------------tgcaatcatcttcaat |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18845596 |
ttagaaacaagtcttcaataatattattacaacta-----ttatgataatcacttgattttctcttcttcctctgatccttgcttgcaatcatcttcaat |
18845690 |
T |
|
| Q |
724 |
ctcagattcttgtttaggactatcactatcaagtgcccttttttct----tgctcttcatcttcatcatcatcttcatctccaaccccattattttccct |
819 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||| |||||||||||||||| | ||||||||||||||| |
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| T |
18845691 |
ctcagattcttgtttaggactatcactatcaagtgcccttttctctctcttgctcttcctcatcaacatcatcttcatctcccaacccattattttccct |
18845790 |
T |
|
| Q |
820 |
cctcacaacaccaccattttttgcattcctctctgctctcaccttcaaaatctccaacaattcatccacagctttctctttcttcctccgattcttaatc |
919 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18845791 |
cctcacaagaccaccattttttgcattcctctctgctctcaccttcaatatctccaacaattcatccacaactttctctttcttcctccgattcttaatc |
18845890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 268 - 424
Target Start/End: Complemental strand, 53396744 - 53396588
Alignment:
| Q |
268 |
tattagctaacactgctgctaccctacttattattactcatattccctacacgtggtcctatcaaagctaatagcctttttcattccatgtgcaccccag |
367 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53396744 |
tattagctaacagtgctgctaccctacttattattactcatattccctacacgtggtcctatcaaagctaatagcctttttcattccatgtgcaccccag |
53396645 |
T |
|
| Q |
368 |
gtgtttaccaacctcccagctggctacccaggttgtaaaggcctaactataactata |
424 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53396644 |
gtgtttaccaacctcccagctggctacccaggttgtaaaggcctaactataactata |
53396588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 53397298 - 53397146
Alignment:
| Q |
8 |
ctaaccaacgtaactattaattttattactacgtaatctgcactgcacaacaattgcaaatctgagtcactacaattagagcatcagcatccaaagataa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53397298 |
ctaaccaacgtaactattaattttattactacgtaatctgcactgcacaacaattgcaaatctgagtcactacaattagagcatcagcatccaaagataa |
53397199 |
T |
|
| Q |
108 |
ctgtccagttttttggatatatatataagtgagctccacacacattatacatta |
161 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
53397198 |
ctgtccagtttttttg-gatatatataagtgagctccacacacattatacatta |
53397146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 514 - 638
Target Start/End: Complemental strand, 53396508 - 53396385
Alignment:
| Q |
514 |
gacagattaattccatagttcaaaatttagaagctatagcttcttccttcccctgtatttcataagccatcttcaatattcannnnnnngttgaattaca |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53396508 |
gacagattaattccatagttcaaaatttagaagctatagcttcttccttcccctgtatttcataagccatcttcaatattca-ttttttgttgaattaca |
53396410 |
T |
|
| Q |
614 |
ctacactgcatgctgctgcatatta |
638 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
53396409 |
ctacactgcatgctgctgcatatta |
53396385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 53396875 - 53396834
Alignment:
| Q |
169 |
tcgttatagccatctatagaagcctcaaaatagattagcttg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
53396875 |
tcgttatagccatctatagaagcctcaaaatagattagcttg |
53396834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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