View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4629-Insertion-2 (Length: 1044)
Name: NF4629-Insertion-2
Description: NF4629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4629-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 5017668 - 5017200
Alignment:
| Q |
7 |
aatcccagtaaggacaagtcatctgaagagaaaaagttgcatacaaacctggaaatccaggaaatgtgtatccagcatggtagaacatattaggaactaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5017668 |
aatcccagtaaggacaagtcatctgaagagaaaaagttgcatacaaacctggaaatccgggaaatgtgtatccagcatggtagaacatattaggaactaa |
5017569 |
T |
|
| Q |
107 |
gttatgtgttgctgtggtagtagcttccgatgcaacaggaaatgcttgccagccattaccattgaatgtctgaaaaatgggagggatggttgctccgaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5017568 |
gttatgtgttgctgtggtagtagcttccgatgcaacaggaaatgcttgccagccattaccattgaatgtctgaaaaatgggagggatgtttgctccgaac |
5017469 |
T |
|
| Q |
207 |
agctgagtcggctgaaatacctgagccccttgttgaggatatggtaactgctgctgccatggtgcttgagtggcagtctgaggaaaacaaggccactgaa |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5017468 |
agctgagtcggctgaaatacctgcgccccttgttgaggatatggtaactgctgctgccatggtgcttgagtggcagtctgaggaaaacaaggccaatgaa |
5017369 |
T |
|
| Q |
307 |
acattgatggttgttgaggatttgagttaggcacattgtcaggcgaagaattactactactgttgctgtcaagagccatatctggttcaactttgtcttg |
406 |
Q |
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| T |
5017368 |
acattgatggttgttgaggatttgagttaggcacattgtcaggcgaataattactactactgttgctgtcaagagccatatctggttcaactttgtcttg |
5017269 |
T |
|
| Q |
407 |
cttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaattgaaatagacaaaaatgtaa |
475 |
Q |
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| T |
5017268 |
cttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaattgaaatagacaaaactgtaa |
5017200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 658 - 1018
Target Start/End: Complemental strand, 5016609 - 5016250
Alignment:
| Q |
658 |
aagaaatagaagattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttgatttccatagtga |
757 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5016609 |
aagaaatagaaaattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttggtttccatagtga |
5016510 |
T |
|
| Q |
758 |
gggatattcatataaggtacgagtgttacaattataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagcattaagggttttgacca |
857 |
Q |
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| T |
5016509 |
gggatattcgtataaggtacgagtgttacaactataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagca-taagggttttgacca |
5016411 |
T |
|
| Q |
858 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactcaaagtgttgttttagattttgtctctggtgcttgtat |
957 |
Q |
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| T |
5016410 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactc-aagtgttgttttagattttgtctctggtgcttgtat |
5016312 |
T |
|
| Q |
958 |
tgtaagttgtaacttcacatggggaatggctacttatgtgcattgcattt-catctttatca |
1018 |
Q |
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| T |
5016311 |
tgtaagttgtaacttcacatggggaatggctacttatgtgcattgcatttccatctttatca |
5016250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 471 - 617
Target Start/End: Complemental strand, 5016750 - 5016606
Alignment:
| Q |
471 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagttatttttaataaatacatcattagcatttcatcttcaaatgcaaatgt |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5016750 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagttatttt-aataaatacatcattagcatttcatcttcaaatgcaaatgt |
5016652 |
T |
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| Q |
571 |
ctcaaatctcgtcattaacaaagctaaaacgaaggagaaagcgaaga |
617 |
Q |
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| T |
5016651 |
ctcaaatctcgtcattaac-aagctaaaacgaaggagaaagcgaaga |
5016606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 5005605 - 5005553
Alignment:
| Q |
150 |
gcttgccagccattaccattgaatgtctgaaaaatgggagggatggttgctcc |
202 |
Q |
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| T |
5005605 |
gcttgccagccattaacattgaatgtctgaaaaatgggagggatatttgctcc |
5005553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 5005339 - 5005292
Alignment:
| Q |
398 |
tttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaa |
445 |
Q |
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|||||| ||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
5005339 |
tttgtcctgcgtgttctgctaatcatattcatcttaatcaaatgaaaa |
5005292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 5005661 - 5005614
Alignment:
| Q |
22 |
aagtcatctgaagagaaaaagttgcatacaaacctggaaatccaggaa |
69 |
Q |
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| T |
5005661 |
aagtcatatgaagagaaaaagttccatacatacctggaaagccaggaa |
5005614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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