View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4629-Insertion-3 (Length: 561)
Name: NF4629-Insertion-3
Description: NF4629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4629-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 31773744 - 31773530
Alignment:
| Q |
8 |
acaagataggtaaaattgcggggcacactaatgtgttgttgtgggggcaccactcactctaacccacaaacaca--gacaaaaaccaccgaaccaaaatt |
105 |
Q |
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| T |
31773744 |
acaacataggtaaaattgcggggcacactaatgtgttgttgtgggggcaccactcactctaacccacaaacacaaagacaaaaaccaccgaaccaaaatt |
31773645 |
T |
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| Q |
106 |
gcatagtatacgacctttgtgctttgttacattccttatttctcacataacaacaacattacaacatgtctttagcgcaaatcaatgccattaccttaaa |
205 |
Q |
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| T |
31773644 |
gcatagtatacgacctttgtgctttgttacattccttatttctcacataacaacaacattacaacatgtctttagcgcaaatcaatgccattaccttaaa |
31773545 |
T |
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| Q |
206 |
tgaaactcgatgttc |
220 |
Q |
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|||||||| |||||| |
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| T |
31773544 |
tgaaactcaatgttc |
31773530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 280 - 452
Target Start/End: Complemental strand, 31773468 - 31773296
Alignment:
| Q |
280 |
accaggagtatctaattactttgctttttctttgtctttttgactcacaatgctttgtgaccatgcataaatttcttaaccgacaacacacttattgtcc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31773468 |
accaggagtatctaattactttgctttttctttgtctttttgactcacaatgctttgtgaccatgcataaatttcttaaccgacaacacacttattgtcc |
31773369 |
T |
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| Q |
380 |
ttttctttttcttttacttacgcaaaaatataaattacttgcttaatatgaattctgaacttgttttgatgaa |
452 |
Q |
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| T |
31773368 |
ttttctttttcttttacttatgcaaaaatataaattacttgcttaatatgaattctgaacttgttttgatgaa |
31773296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 499 - 561
Target Start/End: Complemental strand, 31773251 - 31773189
Alignment:
| Q |
499 |
gttaaaaaatgaaacaagaatcaaataacacttttaagattcacttggtttcagtattttgct |
561 |
Q |
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| T |
31773251 |
gttaaaaaatgaaacaagaatcaaataacacttttaagattcacttggtttcagtattttgct |
31773189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 452
Target Start/End: Complemental strand, 38844274 - 38844145
Alignment:
| Q |
327 |
caatgctttgtgaccatgcataaatttcttaaccgacaacacacttattgtccttttctttttcttttacttacgcaaaaat---ataaattactt-gct |
422 |
Q |
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| T |
38844274 |
caatgttttgtgaccatgcataagtttcttaaccaacaacacacttattgtacttttgtttttcttttacatatgtaaaaatataataaattacttggat |
38844175 |
T |
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| Q |
423 |
taatatgaattctgaacttgttttgatgaa |
452 |
Q |
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| T |
38844174 |
taatatgaattttgaacttgttttgatgaa |
38844145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 38844107 - 38844050
Alignment:
| Q |
499 |
gttaaaaaatgaaacaagaatcaaataacacttttaagattcacttggtttcagtatttt |
558 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
38844107 |
gttaaaaaatgaaacaagaatcaaataacac--ttaagattcacatggtttaagtatttt |
38844050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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