View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4629-Insertion-5 (Length: 166)
Name: NF4629-Insertion-5
Description: NF4629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4629-Insertion-5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 1e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 3686126 - 3685968
Alignment:
| Q |
8 |
aagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgt |
107 |
Q |
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| T |
3686126 |
aagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgt |
3686027 |
T |
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| Q |
108 |
atgtgttataagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatcta |
166 |
Q |
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| T |
3686026 |
atgtgttaaaagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatcta |
3685968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 3693890 - 3693743
Alignment:
| Q |
11 |
aacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatg |
110 |
Q |
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| T |
3693890 |
aacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgtatggttcaggaatgagcggaaatcacagtgtgtatg |
3693791 |
T |
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| Q |
111 |
tgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
157 |
Q |
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| T |
3693790 |
tgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgtt |
3693743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 3679369 - 3679213
Alignment:
| Q |
8 |
aagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcac |
100 |
Q |
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| T |
3679369 |
aagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatagttcaggaatgagcggaaatcac |
3679271 |
T |
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| Q |
101 |
agtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
157 |
Q |
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| T |
3679270 |
agcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 3675689 - 3675595
Alignment:
| Q |
8 |
aagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacag |
102 |
Q |
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| T |
3675689 |
aagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagttctggaatgagcggaaatgacag |
3675595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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