View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4629_high_1 (Length: 306)
Name: NF4629_high_1
Description: NF4629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4629_high_1 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 12894 - 12649
Alignment:
| Q |
43 |
ttcggaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcaccccgtaagttcttagatttcaccaac |
142 |
Q |
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| T |
12894 |
ttcggaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacccggtaagttcttagatttcaccaac |
12795 |
T |
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| Q |
143 |
ttataaagagtaaaatgagaaattaaggttgaaatttcaatttgaaaataatttattatgtatgagcgcatactatcaattattaatgttgtcatcaata |
242 |
Q |
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| T |
12794 |
ttataaagagtaaaatgagaaattaaggttgatatttcaatttgaaaataatttattatgtatgcgcgaatactatcaattattaatgttgtcatcaata |
12695 |
T |
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| Q |
243 |
atcgatattaattagtacttcactaaaactataaagtgcgttgttcat |
290 |
Q |
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| T |
12694 |
attg--attaattagtacttcactaaaactataaagtgggttgttcat |
12649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 37958970 - 37959246
Alignment:
| Q |
18 |
agaaaggtatttgctgggcgagaaattcggaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacc |
117 |
Q |
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| T |
37958970 |
agaaaggtatttgctgggcgagaaattcagaggttcaagatatagacgacacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacc |
37959069 |
T |
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| Q |
118 |
ccgtaagttcttagatttcaccaacttataaagagtaaaatgagaaattaagg---ttgaaa--tttcaatttgaaaataatttattatgtatgagcgca |
212 |
Q |
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| T |
37959070 |
tggtaagttcaaagatttcaccaccttataaagagtaaaatgagaaattaaggtaattgatatttttaaatttgatcataatttattatgtatgcccaca |
37959169 |
T |
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| Q |
213 |
tactatcaattattaatgttgtcatcaataatcgatattaattagtacttcactaaaactataaagtgcgttgttca |
289 |
Q |
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| T |
37959170 |
taataccaattattaatattttcgtcaataattgatattaattagtacttcactatgactataaagtgaattgttca |
37959246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 12635745 - 12635482
Alignment:
| Q |
18 |
agaaaggtatttgctgggcgagaaattcggaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacc |
117 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||| |||| | | |||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
12635745 |
agaaaggtatttgctgggcaagaaattcataggttcaagatatagatgacataacaatgggatttagactgcttaggttgcatggccaccaagtttcacc |
12635646 |
T |
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| Q |
118 |
ccgtaagttcttagatttcaccaacttataaagagtaaaatgagaaattaagg---ttgaaatttcaatttgaaaataatttattatgtatgagcgcata |
214 |
Q |
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| T |
12635645 |
cggtaagttgaaagatttcaccatattataaagagtaaaatgagaaattaaggtaattgatatttcaatttgatcataatttattatgtatgcgtgcata |
12635546 |
T |
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| Q |
215 |
ctatcaattattaatgttgtcatcaataatcgatattaattagtacttcactaaaactataaag |
278 |
Q |
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| T |
12635545 |
atatcaattattaatattttcgtcaataatagatattaattagtacttcactatgactataaag |
12635482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 1802 - 1946
Alignment:
| Q |
144 |
tataaagagtaaaatgagaaattaaggttgaaatttcaatttgaaaataatttattatgtatgagcgcatactatcaattattaatgttgtcatcaataa |
243 |
Q |
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| T |
1802 |
tataaagagtaaaatgagaaattaaggttgatatttcaatttgaaaataatttattatgtatgcgcgaatattatcaattattaatgttgtcatcaataa |
1901 |
T |
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| Q |
244 |
tcgatattaattagtacttcactaaaactataaagtgcgttgttcat |
290 |
Q |
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| T |
1902 |
ttg--attaattagtacttcactaaaactataaagtgggttgttcat |
1946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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