View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-1 (Length: 1136)
Name: NF4630-Insertion-1
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 575 - 1033
Target Start/End: Original strand, 3700435 - 3700895
Alignment:
| Q |
575 |
gtaatctaaagtctatacaaatgatgctaaatggttttgatggcatgcttaatttctattgtaactgaagagcttttcattttaatcacttcattccttt |
674 |
Q |
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| T |
3700435 |
gtaatctaaagtctatacaaatgatgctaaatggttttgatgacatgcttaatttctattgtaactgaagagcttttcattttaatcacttcattccttt |
3700534 |
T |
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| Q |
675 |
agatgcaactatttgcttgttgg-agtagcatttgaggtccccaagcttttattttgagtattcatttaattattctgtgaatacaaagctactacaact |
773 |
Q |
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| T |
3700535 |
agatgcaactatttgcttgttgggagtagcatttgaggtccccaagtttttattttgagtattcatttaattattctgtgaattcaaagctactacaaca |
3700634 |
T |
|
| Q |
774 |
gaaattgtggacaaacacttgagttataatccattatcacctttatatgcagtattttttagacacttttcaaatcaaccaaattgaatgaagctaattg |
873 |
Q |
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| T |
3700635 |
gaaattgtggacaaacacttgagttataatccattatcaactttatatgcagtatttttgagacacttttcaaatcaaccaaaatgaatgaagctaattg |
3700734 |
T |
|
| Q |
874 |
tattttgtagttactttattctctttcttttagcttag-accctagtttcttatatttttctttgttgtagcatttagagcctaattgagagttgaactc |
972 |
Q |
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| T |
3700735 |
tattttgtagttactttattctctttcttttagcttagaaccctagtttcttatatttttctttgttgtagcatttagagcctaattgagagttgaactc |
3700834 |
T |
|
| Q |
973 |
aag-aagcatctacatacaggggttatttccaaggtgtctcaaagacattatagaggtgata |
1033 |
Q |
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| T |
3700835 |
aagaaagcatctacatatagggg-tatttccaaagtgtctcaaagacattatagaggtgata |
3700895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 5 - 529
Target Start/End: Original strand, 3700879 - 3701420
Alignment:
| Q |
5 |
acattatagaggtgataata----ataacctaagagcaactttaacggacgatatcatcatccatttttatgatttttactaaagtttgcggtttgagag |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||| |||||| |||||||||| ||||||||| |
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| T |
3700879 |
acattatagaggtgataatagataataacctaagagcaactttaacggacaatgtcatcatccatttt-atggtttttattaaagtttgctgtttgagag |
3700977 |
T |
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| Q |
101 |
atctccggcacaacaatnnnnnnntgtattatatatgcataaatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagtnnnn |
200 |
Q |
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| T |
3700978 |
atctccgacacaacagtaaaaaaatgtattatatatgcgtaaatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagtaaaa |
3701077 |
T |
|
| Q |
201 |
nnnnnnnnnngaatgaattattttatgatatggctcaatgagatacaaaataatctttaaagaagatcaccattgtagttgctctaaaga---------- |
290 |
Q |
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| T |
3701078 |
aaaaaaa---gaatgaattattttatgatatggctcaatgagatacaaaataatctttaaagaagatcaccattgtagttgctctaaagactaaaataga |
3701174 |
T |
|
| Q |
291 |
-------gtccgtaaattcttcacctaaaatattctaacttaactctttgacataaactcgagcacttcaatgagatgttaaaagatatctttcaactta |
383 |
Q |
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| T |
3701175 |
atctattgtccgtaaattcttcacctaaaatattctaacttaactctttgacataaactcgggcactacaatgagatgttaaaagatatctttcaactta |
3701274 |
T |
|
| Q |
384 |
atcaaagtatgtcctcgaatccaactcaaaaatgcaatattgttaaatctctgagagctatgtcataacaaaaactttgtattgaaaaatgacatgtctt |
483 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| || | ||| ||||||||||||||| |
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| T |
3701275 |
atcaaagtatgtcctcgaatccaactctaaaatgcaacattgttaaatctctgacagctatgtcataacaaaaaccttcttttggaaaatgacatgtctt |
3701374 |
T |
|
| Q |
484 |
ctcggatatttttccaaatttccaatgcactctatccggaacacca |
529 |
Q |
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| T |
3701375 |
ctcggagagtcttccaaatttccaatgcactctatccggaacacca |
3701420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 898 - 993
Target Start/End: Original strand, 3712616 - 3712712
Alignment:
| Q |
898 |
ttcttttagcttagaccctagtttcttatatttttctttgttgtagcatttagagcctaattgagagttgaactcaag-aagcatctacatacaggg |
993 |
Q |
| |
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|||||||||| |||| |||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||| |
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| T |
3712616 |
ttcttttagcctagaacctagtttcttacagttttcattgttgtagcatttagagcctaatggagagttgaactcaagaaagcacctacatataggg |
3712712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 944 - 1033
Target Start/End: Original strand, 3714824 - 3714915
Alignment:
| Q |
944 |
catttagagcctaattgagagttgaactcaag-aagcatctacatacaggggtt-atttccaaggtgtctcaaagacattatagaggtgata |
1033 |
Q |
| |
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||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||| | || |||||||||| |
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| T |
3714824 |
catttagagcctaattgcgagatgaactcaagaaagcatctacatataggggttgatttgcaaggtgtctcaaagatactacagaggtgata |
3714915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 3701479 - 3701525
Alignment:
| Q |
529 |
atgagctgttgaaattggcaaaataatctccaagaaaatcatttggg |
575 |
Q |
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| T |
3701479 |
atgagctgttgaaattggcaaaataatctccaagaaaatcatttggg |
3701525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 726 - 801
Target Start/End: Original strand, 3714745 - 3714817
Alignment:
| Q |
726 |
ttttgagtattcatttaattattctgtgaatacaaagctactacaactgaaattgtggacaaacacttgagttata |
801 |
Q |
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|||| ||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| |
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| T |
3714745 |
ttttaagtattcatttaattattc---gaatacatagcttgtacaactgaaattatggacaaacacttgagttata |
3714817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 3715080 - 3715125
Alignment:
| Q |
245 |
acaaaataatctttaaagaagatcaccattgtagttgctctaaaga |
290 |
Q |
| |
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| T |
3715080 |
acaaaataatctttaaagaagatcaccattgaagttgctctaaaga |
3715125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 3715143 - 3715184
Alignment:
| Q |
291 |
gtccgtaaattcttcacctaaaatattctaacttaactcttt |
332 |
Q |
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| T |
3715143 |
gtccgtaaattcttaacctaaaatattctaagttaactcttt |
3715184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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