View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-10 (Length: 846)
Name: NF4630-Insertion-10
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 359 - 711
Target Start/End: Original strand, 42966084 - 42966436
Alignment:
| Q |
359 |
atatatgaatcttgtaagcatgttaatacttaaaattcgacttgaaatccaagagctattggatgagaagataaatgatctcttcttgtttaatcagaga |
458 |
Q |
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| T |
42966084 |
atatatgaatcttgtaagcatgttaatacttaaaattcgacttgaaatccaagagctattggatgagaagataaatgatctcttcttgtttaatcagata |
42966183 |
T |
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| Q |
459 |
ttttgagtttgaattcaactttaaaaatgcattcgtgttaaaaaatttgaaggagagttttgtcacctattacgaccatgctcggttcaaaggattagtc |
558 |
Q |
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| T |
42966184 |
ttttgagtttgaattcaaccttaaaaatgcattcgtgttaaaaaatttgaaggagagttttatcatctattacgaccatgctcggttcaagggattagtc |
42966283 |
T |
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| Q |
559 |
tttaactttatagttgtaatcagagaatactcaatttacat-nnnnnnnntcaacttaaaagtgaatatttttatgtgggagagtaag-nnnnnnnnnaa |
656 |
Q |
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| T |
42966284 |
tttaactttatagttgtaatcagagaatactcaatttacataaaaaaaaatcaacttaaaagtgaatatttttatgtgggagagtaagttttttttttaa |
42966383 |
T |
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| Q |
657 |
ggaagttccatatatatctatgtgtgtatacacacacatttatacaaacttacac |
711 |
Q |
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| T |
42966384 |
ggaagttcc--atatatctatgtgtgcacacacacacatttatacaaacttacac |
42966436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 42965760 - 42965904
Alignment:
| Q |
96 |
atgcaagataacgatttttagttacggatgagtaaatgttttcaaattatgctagatttatttagcagtannnnnnnaaaagaaaaattcaagtgaatag |
195 |
Q |
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| T |
42965760 |
atgcaagataacgatttttagttacggatgagtaaatgttttcaaattatgttagattta----gcagtatttttttaaaagaaaaattgaagtgaatag |
42965855 |
T |
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| Q |
196 |
atgttacctcaccctatggtaagaaagacatttgaaatcaagaatgttt |
244 |
Q |
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| T |
42965856 |
atgttacctcaacctatggtaagaaagacatttgaaatcaagaatgttt |
42965904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 775 - 846
Target Start/End: Original strand, 42966500 - 42966571
Alignment:
| Q |
775 |
agattgttcatccctttgaacaatggttggatacaaggaaaacaattaaggttcatgggtgggtttgaatag |
846 |
Q |
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| T |
42966500 |
agattgttcatccctttgaacaatggttggataaaaggaaaacaattaaggttcatgggtgggtttgaatag |
42966571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 42965950 - 42966009
Alignment:
| Q |
242 |
tttagtagtatcttttatgcatatatttgttctgctcatatatgtagattctaattgttt |
301 |
Q |
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| T |
42965950 |
tttagtagtatcttttatgcatatatttgttctgctcatatatgtagattctaattgttt |
42966009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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