View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4630-Insertion-12 (Length: 777)

Name: NF4630-Insertion-12
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4630-Insertion-12
NF4630-Insertion-12
[»] scaffold0288 (3 HSPs)
scaffold0288 (206-609)||(17026-17431)
scaffold0288 (8-206)||(16870-17068)
scaffold0288 (698-776)||(17492-17570)
[»] chr3 (9 HSPs)
chr3 (8-204)||(43402743-43402934)
chr3 (365-490)||(41382463-41382590)
chr3 (253-362)||(1686388-1686498)
chr3 (363-490)||(2154463-2154592)
chr3 (364-490)||(2164299-2164427)
chr3 (364-490)||(40084540-40084668)
chr3 (364-490)||(40094283-40094411)
chr3 (365-490)||(10804790-10804917)
chr3 (91-182)||(1686277-1686369)
[»] chr4 (7 HSPs)
chr4 (363-490)||(42114447-42114576)
chr4 (364-490)||(14536817-14536945)
chr4 (365-490)||(14529369-14529496)
chr4 (365-490)||(32194031-32194158)
chr4 (364-489)||(27075303-27075432)
chr4 (364-489)||(27155397-27155526)
chr4 (8-65)||(3577686-3577743)
[»] chr1 (13 HSPs)
chr1 (8-204)||(13548004-13548195)
chr1 (8-204)||(31928591-31928782)
chr1 (46-204)||(41141299-41141457)
chr1 (362-490)||(51283521-51283651)
chr1 (365-490)||(20178261-20178388)
chr1 (380-496)||(20145477-20145594)
chr1 (8-179)||(19753629-19753795)
chr1 (364-490)||(20182817-20182945)
chr1 (376-494)||(17878036-17878156)
chr1 (253-364)||(41141454-41141565)
chr1 (253-364)||(31928482-31928594)
chr1 (8-69)||(13126237-13126298)
chr1 (101-179)||(2775802-2775880)
[»] scaffold0066 (2 HSPs)
scaffold0066 (365-490)||(8407-8534)
scaffold0066 (364-417)||(4-58)
[»] chr8 (10 HSPs)
chr8 (365-490)||(183116-183243)
chr8 (365-483)||(21984441-21984561)
chr8 (364-490)||(23751737-23751864)
chr8 (253-364)||(20686827-20686938)
chr8 (374-490)||(23742466-23742584)
chr8 (44-204)||(20686935-20687094)
chr8 (8-204)||(40220353-40220545)
chr8 (8-204)||(42435943-42436135)
chr8 (12-73)||(17849328-17849389)
chr8 (423-490)||(22693711-22693778)
[»] chr5 (5 HSPs)
chr5 (362-490)||(29683302-29683432)
chr5 (365-490)||(43460834-43460961)
chr5 (21-175)||(8037744-8037897)
chr5 (364-490)||(21079103-21079231)
chr5 (83-172)||(34700874-34700963)
[»] chr2 (5 HSPs)
chr2 (362-490)||(9656365-9656495)
chr2 (9-182)||(6396254-6396427)
chr2 (253-337)||(6396155-6396237)
chr2 (135-204)||(16677225-16677294)
chr2 (8-73)||(13828980-13829045)
[»] scaffold0465 (1 HSPs)
scaffold0465 (364-490)||(7231-7359)
[»] scaffold0077 (1 HSPs)
scaffold0077 (365-490)||(21137-21264)
[»] scaffold0002 (1 HSPs)
scaffold0002 (365-490)||(377192-377319)
[»] chr6 (7 HSPs)
chr6 (365-490)||(6082160-6082287)
chr6 (364-490)||(24843114-24843242)
chr6 (57-204)||(17759029-17759171)
chr6 (253-364)||(17759168-17759280)
chr6 (43-130)||(22615422-22615509)
chr6 (647-717)||(3791951-3792020)
chr6 (8-65)||(11137792-11137849)
[»] scaffold0310 (1 HSPs)
scaffold0310 (364-490)||(19040-19168)
[»] scaffold0198 (1 HSPs)
scaffold0198 (365-483)||(16211-16331)
[»] scaffold0014 (1 HSPs)
scaffold0014 (12-204)||(81234-81421)
[»] chr7 (6 HSPs)
chr7 (8-204)||(4509556-4509747)
chr7 (8-204)||(4511398-4511589)
chr7 (364-490)||(28721981-28722108)
chr7 (365-490)||(48814613-48814740)
chr7 (44-204)||(6431125-6431280)
chr7 (8-65)||(6067866-6067923)
[»] scaffold0096 (1 HSPs)
scaffold0096 (365-490)||(38680-38807)
[»] scaffold0023 (1 HSPs)
scaffold0023 (365-490)||(41430-41556)
[»] scaffold0163 (2 HSPs)
scaffold0163 (421-490)||(15164-15234)
scaffold0163 (421-490)||(23885-23954)


Alignment Details
Target: scaffold0288 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 206 - 609
Target Start/End: Original strand, 17026 - 17431
Alignment:
Q  206 tggaagcttgtggaactactaaggatagttggatgcaagtgctacccagtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17026 tggaagcttgtggaactactaaggatagttggatgcaagtgctacccagtggaggtcggtgagtagatcaaggttcacgtgaatatttagacttgattga 17125  T
Q  306 ttttgtcttgaagagtagtcaatgcaaggttatggagcaaggtggttgatggttaaatttgttgaagcaaaaattcctttaaattgtttttatgtgataa 405  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  17126 ttttgtcttgaagagtagtcaaggcaaggttatggagcaaggtggttgatggttaaatttgttgaagcaaaaacccctttaaattgtttttaagtgataa 17225  T
Q  406 acaaactcttgtgttaaattaagattataatcttatgttgttatttgatgtgtgcttttgagtatattttattaaggacaggaaattcaaaatctcataa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17226 acaaactcttgtgttaaattaagattataatcttatgttgttatttgatgtgtgcttttgagtgtattttattaaagacaggaaattcaaaatctcataa 17325  T
Q  506 atacgtatatgttctttggtaat--tatcatcaagctctttacatgttaaggaaagcatgatcttaatttttaattaaaagattaattatgaaaggatat 603  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17326 atacgtatatgttctttggtaattatatcatcaagctctttacaggttaaggaaagcatgatcttaatttttaattaaaagattaattatgaaaggatat 17425  T
Q  604 ttatcg 609  Q
    ||||||    
T  17426 ttatcg 17431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 16870 - 17068
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||    
T  16870 gttatggtgtagacttgtacaattacctaaaaatcttagtgtagtttgatacaaggatcttcaagagcgccaaaggcattcttaggtttgaaaaggtaag 16969  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtgct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16970 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtgct 17068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 698 - 776
Target Start/End: Original strand, 17492 - 17570
Alignment:
Q  698 ggtagagaaagaaaattgtgctatctttagttgaatgattcatttaagnnnnnnnngtatagtacatcacaacatctgc 776  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  17492 ggtagagaaacaaagttgtgctatctttagttgaatgattcatttaagttttttttgtatagtacatcacaacatctgc 17570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 43402934 - 43402743
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||| |||||| || ||||||||||   |||||||||| |||||||||| ||||||||| ||  || ||||| | |||||| || ||||||     
T  43402934 gttatggtgtaggcttgtggaactacctaaaaatcctagtgtagttggatgcaaggaacttcaagagagcggaaggcattatgaggtttcaagaggtaaa 43402835  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    |||| || ||||| | |||||||||| ||||||||||||||||     || ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  43402834 ggtgtaaacttgtggaactacaaagtgtagttggatgcaagga-----ataagacttggaagcttgtggaactaccgaggattgttggatgcaagtg 43402743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 41382463 - 41382590
Alignment:
Q  365 tgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  41382463 tgttgaagcaaaaatccctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgctc 41382562  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  41382563 ttgagtgaattttattaaggataggaaa 41382590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 1686388 - 1686498
Alignment:
Q  253 agtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattgattttgtcttgaagagtag-tcaatgcaaggttatggagcaaggtggt 351  Q
    ||||||||||||||||||||||||||| || ||||  |||| |||||||||| ||||||||||| || ||| |||| ||||||||| ||||||||||| |    
T  1686388 agtggaggtcggtgtgtagatcaaggtccaagtgaggatttggacttgattggttttgtcttgaggaatagttcaaggcaaggttaaggagcaaggtgat 1686487  T
Q  352 tgatggttaaa 362  Q
    |||||||||||    
T  1686488 tgatggttaaa 1686498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 363 - 490
Target Start/End: Original strand, 2154463 - 2154592
Alignment:
Q  363 tttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgc 460  Q
    ||||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| ||||||||    
T  2154463 tttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgc 2154562  T
Q  461 ttttgagtatattttattaaggacaggaaa 490  Q
    ||||||||  ||| |||||| || ||||||    
T  2154563 ttttgagtgaattctattaaagataggaaa 2154592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 2164299 - 2164427
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||    
T  2164299 ttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgct 2164398  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
    |||||||  ||| |||||| || ||||||    
T  2164399 tttgagtgaattctattaaagataggaaa 2164427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 40084668 - 40084540
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgtt-aaattaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| || |||||||||  |||||||||||||||||| || |||||||||||||||| |||| | ||||||| |||||||||    
T  40084668 ttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattgaaattaagattataatgttatttggttatttaatgtgtgct 40084569  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
    |||||||  ||| |||||| || ||||||    
T  40084568 tttgagtgaattctattaaagataggaaa 40084540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 40094411 - 40094283
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||    
T  40094411 ttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgct 40094312  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
    |||||||  ||| |||||| || ||||||    
T  40094311 tttgagtgaattctattaaagataggaaa 40094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 10804790 - 10804917
Alignment:
Q  365 tgttgaagcaaaaattcctttaaatt-gtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    |||| |||||||||| ||||| |||| |||||||  ||||||| |||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  10804790 tgttaaagcaaaaatccctttgaatttgtttttaaatgataaaaaaactcttgtattaaaattaagattataatattatttggttatttaatgtgtgctc 10804889  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  10804890 ttgagtgaattttattaaggaaaggaaa 10804917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 1686277 - 1686369
Alignment:
Q  91 aggtttgaaaaggtaagggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataa-tcagacttggaagcttgtggaactac 182  Q
    ||||||| | |||||| ||||||||||||| |||||||||||| ||||||||||||||||||| || | | |||||||||||||||| |||||    
T  1686277 aggtttgtagaggtaaaggtgaaagcttgtgggactacaaagtgtagttggatgcaaggagaaaaagtaaaacttggaagcttgtgggactac 1686369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 42114576 - 42114447
Alignment:
Q  363 tttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgc 460  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| ||||||||    
T  42114576 tttgttgaagcaaaaattcctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgc 42114477  T
Q  461 ttttgagtatattttattaaggacaggaaa 490  Q
    | ||||||  ||||||||||||| ||||||    
T  42114476 tcttgagtgaattttattaaggataggaaa 42114447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 14536817 - 14536945
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| ||||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||    
T  14536817 ttgttgaagcaaaaatccctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgct 14536916  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  14536917 cttgagtgaattttattaaggataggaaa 14536945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 14529369 - 14529496
Alignment:
Q  365 tgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| ||||||||||||  | |||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  14529369 tgttgaagcaaaaatccctttgaaattgtttttaaataataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgcta 14529468  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  14529469 ttgagtgaattttattaaggataggaaa 14529496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 32194031 - 32194158
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  32194031 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgctc 32194130  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  32194131 ttgagtgaattttattaaggataggaaa 32194158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 364 - 489
Target Start/End: Complemental strand, 27075432 - 27075303
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa---ttaagattataatcttatgttgttatttgatgtgtg 459  Q
    |||||| |||||||||  |||| |||||||||||| |||||||||||| |||||| |||||   ||||||||||||| |||  | |||| || |||||||    
T  27075432 ttgttgtagcaaaaatctctttgaaattgtttttaagtgataaacaaattcttgtattaaaagattaagattataattttacatggttacttaatgtgtg 27075333  T
Q  460 cttttgagtatattttattaaggacaggaa 489  Q
    ||||||||||||||| ||||||||||||||    
T  27075332 cttttgagtatatttcattaaggacaggaa 27075303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 364 - 489
Target Start/End: Complemental strand, 27155526 - 27155397
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa---ttaagattataatcttatgttgttatttgatgtgtg 459  Q
    |||||| |||||||||  |||| |||||||||||| |||||||||||| |||||| |||||   ||||||||||||| |||  | |||| || |||||||    
T  27155526 ttgttgtagcaaaaatctctttgaaattgtttttaagtgataaacaaattcttgtattaaaagattaagattataattttacatggttacttaatgtgtg 27155427  T
Q  460 cttttgagtatattttattaaggacaggaa 489  Q
    ||||||||||||||| ||||||||||||||    
T  27155426 cttttgagtatatttcattaaggacaggaa 27155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 3577743 - 3577686
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggat 65  Q
    ||||||||||||||||||| || |||||||||    |||||||||| |||||||||||    
T  3577743 gttatggtgtagacttgtggaactacctaaaattcctagtgtagttggatgcaaggat 3577686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 13548195 - 13548004
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||| |||||| || ||||||||||   |||| ||||| |||||||||| ||||||||| ||  || ||||||  | ||||||||||||||     
T  13548195 gttatggtgtaggcttgtggaactacctaaaaatcctagtttagttggatgcaaggaacttcaagagggcggaaggcattccgaagtttgaaaaggtaaa 13548096  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    ||||||| ||||| | |||||||||| |||| |||||||||||     || ||||||||||||||||||||||||  ||| |  |||||||||||||    
T  13548095 ggtgaaaacttgtggaactacaaagtgtagtcggatgcaagga-----ataagacttggaagcttgtggaactaccgagggtgtttggatgcaagtg 13548004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 31928782 - 31928591
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||| |||||| || ||||||||||   |||||||||| |||||||||| |||||||||  |  || |||||   ||||||||| ||||||     
T  31928782 gttatggtgtaggcttgtggaactacctaaaaatcctagtgtagttggatgcaaggaacttcaagagatcggaaggcatttcgaggtttgaagaggtaaa 31928683  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    ||||||| ||||| | ||||||||||  |||||||||||||||     || ||||||||||||||||||||||||  ||| | ||||||||||||||    
T  31928682 ggtgaaaacttgtggaactacaaagtgcagttggatgcaagga-----ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtg 31928591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 41141299 - 41141457
Alignment:
Q  46 gtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtgaaagcttgttggactacaaagtatagttggatgc 145  Q
    |||||||| |||||||||||||||||||| ||  || ||||||  ||||||||| |||||||| || ||||||||   |||||||||| |||||||||||    
T  41141299 gtgtagttggatgcaaggatcttcaagagggcagaaggcattccgaggtttgaagaggtaaggatggaagcttgtgtaactacaaagtgtagttggatgc 41141398  T
Q  146 aaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    |||| ||  ||||||||||| ||  ||||||||||||  ||| | ||||||||||||||    
T  41141399 aaggtgaggaatcagacttgaaaatttgtggaactaccgagggtggttggatgcaagtg 41141457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 51283651 - 51283521
Alignment:
Q  362 atttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtg 459  Q
    |||||||||||||||||| |||||||| |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||    
T  51283651 atttgttgaagcaaaaatccctttaaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtg 51283552  T
Q  460 cttttgagtatattttattaaggacaggaaa 490  Q
    || ||||||  ||| ||||||||| ||||||    
T  51283551 ctcttgagtgaattctattaaggataggaaa 51283521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 20178261 - 20178388
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||||||||| ||||||||| ||| |||| | ||||||| |||||||||     
T  20178261 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtgttaaaattaagattacaatgttatttggttatttaatgtgtgctc 20178360  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  20178361 ttgagtgaattttattaaggataggaaa 20178388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 380 - 496
Target Start/End: Original strand, 20145477 - 20145594
Alignment:
Q  380 tcctttaaattgtttttatgtgataaacaaactcttgtgtt-aaattaagattataatcttatgttgttatttgatgtgtgcttttgagtatattttatt 478  Q
    ||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||| || |||||||||||||| |||||| || |||  |  ||||||||    
T  20145477 tcctttaaattgtttttaaatgataaacagactcttgtgttaaaattaagattatgattttatgttgttatttaatgtgtcctcttggatgaattttatt 20145576  T
Q  479 aaggacaggaaattcaaa 496  Q
    ||||||| ||||||||||    
T  20145577 aaggacatgaaattcaaa 20145594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 19753629 - 19753795
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||| |||||| || ||||||||||   |||||||||| |||||||| | ||||||||| ||  || ||||||  | ||||||| ||||||     
T  19753629 gttatggtgtaggcttgtgtaactacctaaaaatcctagtgtagttggatgcaagtaacttcaagagggcggaaggcattccgaagtttgaagaggtaaa 19753728  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaac 179  Q
    |||||||  |||| | |||||||||| ||||||||||||||||     || |||||||||||||||||||||    
T  19753729 ggtgaaaaattgtggaactacaaagtgtagttggatgcaagga-----ataagacttggaagcttgtggaac 19753795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 20182817 - 20182945
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| || ||||||||   |||||||||||||||||| ||||| ||||||||| ||| |||| | ||||||| |||||||||    
T  20182817 ttgttgaagcaaaaatccctttgaacttgtttttcaatgataaacaaactcttgtattaaaattaagattacaatgttatttggttatttaatgtgtgct 20182916  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  20182917 cttgagtgaattttattaaggataggaaa 20182945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 494
Target Start/End: Original strand, 17878036 - 17878156
Alignment:
Q  376 aaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgcttttgagtatatt 473  Q
    |||||||||| ||||| ||||||  ||||||| |||||||| ||||||| ||||||| || || |||||||||||||| ||||||||| |||| |  |||    
T  17878036 aaattcctttgaaattatttttaaatgataaataaactcttatgttaaaattaagatcatgattttatgttgttatttaatgtgtgctcttgaatgaatt 17878135  T
Q  474 ttattaaggacaggaaattca 494  Q
    ||||||||||| |||||||||    
T  17878136 ttattaaggactggaaattca 17878156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 41141454 - 41141565
Alignment:
Q  253 agtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattgattttgtcttgaagagtagtcaatgcaaggttatggagcaaggtggtt 352  Q
    ||||||||||||||| ||||||| |||||| | ||  ||||||||||||| | ||||||||||| || | ||||| ||||||||| ||| ||| ||||||    
T  41141454 agtggaggtcggtgtatagatcagggttcaagcgaggatttagacttgatcggttttgtcttgaggaatggtcaaggcaaggttaaggaccaacgtggtt 41141553  T
Q  353 gatggttaaatt 364  Q
    ||| ||||||||    
T  41141554 gatagttaaatt 41141565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 253 - 364
Target Start/End: Complemental strand, 31928594 - 31928482
Alignment:
Q  253 agtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattgattttgtcttgaagagtagt-caatgcaaggttatggagcaaggtggt 351  Q
    ||||||||||||||||| |||||| ||||| |      ||| |||||||||| ||||||||||  || |||| ||| ||||||||| |||||||||||||    
T  31928594 agtggaggtcggtgtgtggatcaaagttcaagcagggctttggacttgattggttttgtcttggggaatagttcaaggcaaggttaaggagcaaggtggt 31928495  T
Q  352 tgatggttaaatt 364  Q
    |||||||||||||    
T  31928494 tgatggttaaatt 31928482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 13126298 - 13126237
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttc 69  Q
    ||||||||||||||||||| || |||||||||   ||||||||||| |||||||||||||||    
T  13126298 gttatggtgtagacttgtggaactacctaaaattcttagtgtagttggatgcaaggatcttc 13126237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 2775880 - 2775802
Alignment:
Q  101 aggtaagggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaac 179  Q
    |||||| |||| || ||||| |||||| ||||| ||||| ||||||||||||| ||||| |||||| || |||| ||||    
T  2775880 aggtaaaggtggaaacttgtgggactataaagtgtagttagatgcaaggagaaaaatcaaacttgggagtttgtcgaac 2775802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 8534 - 8407
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| |||||||| |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| ||||||||||    
T  8534 tgttgaagcaaaaatccctttaaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgctt 8435  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  |||||||||| || ||||||    
T  8434 ttgagtgaattttattaatgataggaaa 8407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 58 - 4
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgt 417  Q
    |||||||||||||||| |||||||| |||||||||  ||||||||||||||||||    
T  58 ttgttgaagcaaaaatccctttaaacttgtttttaaatgataaacaaactcttgt 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 183243 - 183116
Alignment:
Q  365 tgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  183243 tgttgaagcaaaaatccctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgctc 183144  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  183143 ttgagtgaattttattaaggataggaaa 183116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 483
Target Start/End: Complemental strand, 21984561 - 21984441
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| ||||||||| |||||||||     
T  21984561 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttattttgttatttaatgtgtgctc 21984462  T
Q  463 ttgagtatattttattaagga 483  Q
    ||||||  ||||| |||||||    
T  21984461 ttgagtgaattttgttaagga 21984441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 23751864 - 23751737
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    ||||||||| |||||| ||||| ||||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||    
T  23751864 ttgttgaag-aaaaatccctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgct 23751766  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  23751765 cttgagtgaattttattaaggataggaaa 23751737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 253 - 364
Target Start/End: Complemental strand, 20686938 - 20686827
Alignment:
Q  253 agtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattgattttgtcttgaagagtagtcaatgcaaggttatggagcaaggtggtt 352  Q
    ||||||||||||||||||||||||||||||   ||  |||| || ||||||| ||||||||||| ||| |||||| ||||||||| |||  |||||||||    
T  20686938 agtggaggtcggtgtgtagatcaaggttcaaacgagaatttggagttgattggttttgtcttgaggagaagtcaaggcaaggttaaggattaaggtggtt 20686839  T
Q  353 gatggttaaatt 364  Q
    ||||||||||||    
T  20686838 gatggttaaatt 20686827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 23742584 - 23742466
Alignment:
Q  374 aaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgcttttgagtata 471  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| ||||||||| || |||  |    
T  23742584 aaaaatccctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgctctttagtgaa 23742485  T
Q  472 ttttattaaggacaggaaa 490  Q
    |||||||||||| ||||||    
T  23742484 ttttattaaggataggaaa 23742466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 20687094 - 20686935
Alignment:
Q  44 tagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtgaaagcttgttggactacaaagtatagttggat 143  Q
    |||||||||| | |||||||||||||||||| ||  || ||||||| ||||||||| ||||||  |||||| ||| | ||||| |||| | |||||  ||    
T  20687094 tagtgtagttgggtgcaaggatcttcaagagggctgaaggcattctgaggtttgaagaggtaaaagtgaaaacttatgggacttcaaattgtagttatat 20686995  T
Q  144 gcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    |||||| ||| |||   | |||||||||||||| |||||  ||| | ||||||||||||||    
T  20686994 gcaaggggaa-aattgaatttggaagcttgtgggactaccgagggtggttggatgcaagtg 20686935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 40220545 - 40220353
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggta-- 105  Q
    ||||||||| ||||||||| || |||||||||   | ||||| ||| |||||||| |||||||| || ||  || ||||||  ||| ||||| |||||      
T  40220545 gttatggtggagacttgtggaactacctaaaatcct-agtgtggttggatgcaagaatcttcaaaagagcggaaggcattccgagggttgaagaggtaca 40220447  T
Q  106 agggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    |||||| |||||||| |  ||||   || ||| ||||||||||||     || ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  40220446 agggtggaagcttgtggagctacttggtgtagctggatgcaagga-----ataagacttggaagcttgtggaactaccgaggatggttggatgcaagtg 40220353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 42436135 - 42435943
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggta-- 105  Q
    ||||||||| ||||||||| || |||||||||   | ||||| ||| |||||||||||||||||||| ||   | ||||||  ||| ||||| |||||      
T  42436135 gttatggtggagacttgtggaactacctaaaatcct-agtgtggttggatgcaaggatcttcaagagagcgggaggcattccgagggttgaagaggtaca 42436037  T
Q  106 agggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    |||||| |||||||| |  ||||   || |||||||| |||||||     || ||||||||||||||||||||||||  ||| | ||||||||||||||    
T  42436036 agggtggaagcttgtggagctacttggtgtagttggacgcaagga-----ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtg 42435943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 17849328 - 17849389
Alignment:
Q  12 tggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaaga 73  Q
    ||||||||||||||| || |||||||||    |||||||||| |||||||||||||||||||    
T  17849328 tggtgtagacttgtggaactacctaaaattcctagtgtagttggatgcaaggatcttcaaga 17849389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 22693711 - 22693778
Alignment:
Q  423 attaagattataatcttatgttgttatttgatgtgtgcttttgagtatattttattaaggacaggaaa 490  Q
    |||||||||||||| |||| | | ||||| ||||||||| ||||||  ||||||||||||| ||||||    
T  22693711 attaagattataattttatttgggtatttaatgtgtgctcttgagtgaattttattaaggataggaaa 22693778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 29683432 - 29683302
Alignment:
Q  362 atttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtg 459  Q
    |||||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||    
T  29683432 atttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtg 29683333  T
Q  460 cttttgagtatattttattaaggacaggaaa 490  Q
    |||||||||  ||| ||||||||| ||||||    
T  29683332 cttttgagtgaattctattaaggataggaaa 29683302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 43460961 - 43460834
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| |||||| |||||| |||| | ||||||| |||||||||     
T  43460961 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagagtataattttatttggttatttaatgtgtgctc 43460862  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  43460861 ttgagtgaattttattaaggataggaaa 43460834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 8037744 - 8037897
Alignment:
Q  21 cttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtgaaagcttgt 120  Q
    |||||| ||||| ||||||| ||| |||||||| ||||||||||| ||||||||  |  || ||||||| ||| |||| | ||||| |||||||||||||    
T  8037744 cttgtggaattaactaaaaagtttggtgtagttggatgcaaggatattcaagaggacagaaggcattctaagggttgaga-ggtaaaggtgaaagcttgt 8037842  T
Q  121 tggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtg 175  Q
     ||||||||||||  |||||||||||| ||||| |||||||| | |||| |||||    
T  8037843 gggactacaaagtgcagttggatgcaaagagaagaatcagacgtcgaagtttgtg 8037897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 21079231 - 21079103
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| || |||||||||  | |||||||||||||||| ||||| ||||||||||||| |||| | ||||||| || ||||||    
T  21079231 ttgttgaagcaaaaatccctttgaacttgtttttaaataataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatttgtgct 21079132  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  21079131 cttgagtgaattttattaaggataggaaa 21079103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 34700874 - 34700963
Alignment:
Q  83 gcattcttaggtttgaaaaggtaagggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagctt 172  Q
    ||||||||| | || || ||||||  ||||||||||||   |||||||| | |||||| ||||||||||||  |||||||||||||||||    
T  34700874 gcattcttaaggttaaagaggtaaatgtgaaagcttgtctaactacaaattgtagttgcatgcaaggagaaggatcagacttggaagctt 34700963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 362 - 490
Target Start/End: Original strand, 9656365 - 9656495
Alignment:
Q  362 atttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtg 459  Q
    |||||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||    
T  9656365 atttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtg 9656464  T
Q  460 cttttgagtatattttattaaggacaggaaa 490  Q
    || ||||||  ||||||||||||| ||||||    
T  9656465 ctcttgagtgaattttattaaggataggaaa 9656495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 6396427 - 6396254
Alignment:
Q  9 ttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagg 108  Q
    |||||| ||||||||||  || |||||||||  |  |||||||||   |||||||||||||||||| ||  ||   ||||  ||||||||| || ||| |    
T  6396427 ttatggcgtagacttgtataactacctaaaagttcgagtgtagttgagtgcaaggatcttcaagagggcggaagatattccgaggtttgaagagataaag 6396328  T
Q  109 gtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactac 182  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  6396327 gtgaaagcttgtgagactataaagtgtagttggatgcaaggagaagaatcagacttggatgcttgtgggactac 6396254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 6396237 - 6396155
Alignment:
Q  253 agtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattgattttgtcttgaagagtagtcaatgcaaggtta 337  Q
    ||||||||| |||||||||||||||||||| |  |  |||| |||||||| ||||||||||| | ||||||||||||||||||||    
T  6396237 agtggaggt-ggtgtgtagatcaaggttcaagcaaggatttggacttgat-gattttgtcttaaggagtagtcaatgcaaggtta 6396155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 16677225 - 16677294
Alignment:
Q  135 tagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    ||||||||||||||||||| ||||| ||||| ||| || ||||||||  |||| | ||||||||||||||    
T  16677225 tagttggatgcaaggagaaaaatcatacttgaaagtttatggaactaacaagggtggttggatgcaagtg 16677294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13829045 - 13828980
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaaga 73  Q
    ||||||||||| ||||||| || || ||||||  | |||||||||| |||||||| ||||||||||    
T  13829045 gttatggtgtatacttgtggaactaactaaaatttctagtgtagttggatgcaagaatcttcaaga 13828980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 7231 - 7359
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaa-attaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||||||||||| |||| |||||||||||||| |||| | ||||||| |||||||||    
T  7231 ttgttgaagcaaaaatccctttgaaattgtttctaaatgataaacaaactcttgtattaagattaagattataattttatttggttatttaatgtgtgct 7330  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  7331 cttgagtgaattttattaaggataggaaa 7359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 21264 - 21137
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  21264 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgctc 21165  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  21164 ttgagtgaattttattaaggataggaaa 21137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 377192 - 377319
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| |||||| |||||| |||| | ||||||| ||||||||||    
T  377192 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagagtataattttatttggttatttaatgtgtgctt 377291  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  377292 ttgagtgaattttattaaggataggaaa 377319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 6082287 - 6082160
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  6082287 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgctc 6082188  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  6082187 ttgagtgaattttattaaggataggaaa 6082160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 24843114 - 24843242
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||| ||||||| ||||| ||||||||||||  |||||||||||||||||| ||||| |||||| |||||| |||| | ||||||| |||||||||    
T  24843114 ttgttgaaacaaaaatccctttgaaattgtttttaaatgataaacaaactcttgtattaaaattaagagtataattttatttggttatttaatgtgtgct 24843213  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  24843214 cttgagtgaattttattaaggataggaaa 24843242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 17759029 - 17759171
Alignment:
Q  57 tgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataa 156  Q
    |||||||| ||||||||| ||  || ||||||  |||||||||||||||| ||||||| ||||| | |||||||||| |||||| ||||||||     ||    
T  17759029 tgcaaggaacttcaagagggcggaaggcattccgaggtttgaaaaggtaaaggtgaaaacttgtggaactacaaagtgtagttgaatgcaagg-----aa 17759123  T
Q  157 tcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    | |||  ||||||||||||||||||| ||||   ||||||||||||||    
T  17759124 taagatatggaagcttgtggaactaccaagggaggttggatgcaagtg 17759171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 17759168 - 17759280
Alignment:
Q  253 agtggaggtcggtgtgtagatcaaggttcacgtgaatatttagacttgattgattttgtcttgaagagtagt-caatgcaaggttatggagcaaggtggt 351  Q
    ||||||||||||||||| |||||||||||| |      ||||||||||||||||||||||||   || |||| ||| |||| |||| |||||||||||||    
T  17759168 agtggaggtcggtgtgtggatcaaggttcaagcagggctttagacttgattgattttgtcttagggaatagttcaaggcaatgttaaggagcaaggtggt 17759267  T
Q  352 tgatggttaaatt 364  Q
    |||||||||||||    
T  17759268 tgatggttaaatt 17759280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 22615422 - 22615509
Alignment:
Q  43 ttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtgaaagcttgttggactacaa 130  Q
    |||||||||||||||||||| ||||||||||| ||  || ||||||| |   ||||||||||||| |||||||||||| | |||||||    
T  22615422 ttagtgtagtttgatgcaagaatcttcaagagagcagaaggcattctgaaagttgaaaaggtaagagtgaaagcttgtggaactacaa 22615509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 647 - 717
Target Start/End: Complemental strand, 3792020 - 3791951
Alignment:
Q  647 ttttgaatgacttatccaccaaggtaacacgcagcagggaaaaaccaagttggtagagaaagaaaattgtg 717  Q
    |||||||||| | |||||| ||||||||| |||| |||||||  |||||||||||||||||||||||||||    
T  3792020 ttttgaatgattcatccac-aaggtaacatgcagaagggaaactccaagttggtagagaaagaaaattgtg 3791951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11137792 - 11137849
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggat 65  Q
    ||||||||||||||||||| || |||||||||    |||||||||| |||||||||||    
T  11137792 gttatggtgtagacttgtggaactacctaaaattcctagtgtagttggatgcaaggat 11137849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 19168 - 19040
Alignment:
Q  364 ttgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||  |||||||||    
T  19168 ttgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttattgaatgtgtgct 19069  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  19068 cttgagtgaattttattaaggataggaaa 19040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 483
Target Start/End: Original strand, 16211 - 16331
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  16211 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataatgttatttggttatttaatgtgtgctc 16310  T
Q  463 ttgagtatattttattaagga 483  Q
    ||||||  |||||||||||||    
T  16311 ttgagtgaattttattaagga 16331  T

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Target: scaffold0014 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 81421 - 81234
Alignment:
Q  12 tggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtg 111  Q
    |||||||| |||||| || |||||||| |   |||||||||| |||||||||| ||||||||| ||  || ||||||   |||||||| |||||| | |     
T  81421 tggtgtaggcttgtggaactacctaaatatcctagtgtagttggatgcaaggaacttcaagagggcggaaggcattccgtggtttgaagaggtaaagtta 81322  T
Q  112 aaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    ||| ||||| | |||||||||| ||||||||||||||||     || ||||||||||||||||||||||||  ||| | | ||||||||||||    
T  81321 aaaacttgtggaactacaaagtgtagttggatgcaagga-----ataagacttggaagcttgtggaactaccgagggtggctggatgcaagtg 81234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 4509747 - 4509556
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||| |||||| || || |||||||   |||||||||| |||||||||| ||||||||  ||  || ||||||  | ||||||| ||||||     
T  4509747 gttatggtgtaggcttgtggaactatctaaaaatcctagtgtagttggatgcaaggaacttcaagaaggcggaaggcattccgaagtttgaagaggtaaa 4509648  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    ||||||| ||||| | |||||||||| |||||||||||||||     |||  |||||| |||||||||||| |||  ||| | ||||||||||||||    
T  4509647 ggtgaaaacttgtggaactacaaagtgtagttggatgcaagg-----aataggacttgaaagcttgtggaattaccgagggtggttggatgcaagtg 4509556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 4511589 - 4511398
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaag 107  Q
    |||||||||||| |||||| || || |||||||   |||||||||| |||||||||| ||||||||  ||  || ||||||  | ||||||| ||||||     
T  4511589 gttatggtgtaggcttgtggaactatctaaaaatcctagtgtagttggatgcaaggaacttcaagaaggcggaaggcattccgaagtttgaagaggtaaa 4511490  T
Q  108 ggtgaaagcttgttggactacaaagtatagttggatgcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    ||||||| ||||| | |||||||||| |||||||||||||||     |||  |||||| |||||||||||| |||  ||| | ||||||||||||||    
T  4511489 ggtgaaaacttgtggaactacaaagtgtagttggatgcaagg-----aataggacttgaaagcttgtggaattaccgagggtggttggatgcaagtg 4511398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 28722108 - 28721981
Alignment:
Q  364 ttgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgct 461  Q
    |||||||||||||||| ||||| ||||||||||||  |||||||||||||||| | ||||| ||||||||||||| |||| | ||||||  |||||||||    
T  28722108 ttgttgaagcaaaaatccctttgaaattgtttttaaatgataaacaaactcttatattaaaattaagattataattttatttggttatta-atgtgtgct 28722010  T
Q  462 tttgagtatattttattaaggacaggaaa 490  Q
     ||||||  ||||||||||||| ||||||    
T  28722009 cttgagtgaattttattaaggataggaaa 28721981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 48814740 - 48814613
Alignment:
Q  365 tgttgaagcaaaaattccttt-aaattgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||| ||||||| ||||| ||||| ||||||  |||||||||||||||||| ||||| |||||| |||||| |||| | ||||||| |||||||||     
T  48814740 tgttgaaacaaaaatccctttgaaattatttttaaatgataaacaaactcttgtattaaaattaagagtataattttatttggttatttaatgtgtgctc 48814641  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  48814640 ttgagtgaattttattaaggataggaaa 48814613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 6431125 - 6431280
Alignment:
Q  44 tagtgtagtttgatgcaaggatcttcaagagcgcctaaagcattcttaggtttgaaaaggtaagggtgaaagcttgttggactacaaagtatagttggat 143  Q
    ||||| |||| |||||||| | ||||||||| ||  || ||||||  | ||||||| |||||| ||||||| ||||| | |||||||||| | |||||||    
T  6431125 tagtgcagttggatgcaagaaacttcaagagggcggaaggcattccgaagtttgaagaggtaaaggtgaaaacttgtggaactacaaagtgttgttggat 6431224  T
Q  144 gcaaggagaataatcagacttggaagcttgtggaactactaaggatagttggatgcaagtg 204  Q
    |||||||     || ||||||||||||||||||||||||  ||| | ||||||||||||||    
T  6431225 gcaagga-----ataagacttggaagcttgtggaactaccgagggtggttggatgcaagtg 6431280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 6067923 - 6067866
Alignment:
Q  8 gttatggtgtagacttgtgcaattacctaaaaaatttagtgtagtttgatgcaaggat 65  Q
    ||||| ||||||||||||  ||||||||||||  | |||||||||| |||||||||||    
T  6067923 gttattgtgtagacttgtaaaattacctaaaatttctagtgtagttggatgcaaggat 6067866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 38680 - 38807
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||| ||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| |||||||||     
T  38680 tgttgaaacaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattataattttatttggttatttaatgtgtgctc 38779  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  |||||||| |||| ||||||    
T  38780 ttgagtgaattttatttaggataggaaa 38807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 490
Target Start/End: Original strand, 41430 - 41556
Alignment:
Q  365 tgttgaagcaaaaattcctttaaa-ttgtttttatgtgataaacaaactcttgtgttaaa-ttaagattataatcttatgttgttatttgatgtgtgctt 462  Q
    ||||||||||||||| ||||| || |||||||||  |||||||||||||||||| ||||| ||||||||||| | |||| | ||||||| |||||||||     
T  41430 tgttgaagcaaaaatccctttgaacttgtttttaaatgataaacaaactcttgtattaaaattaagattatatt-ttatttggttatttaatgtgtgctc 41528  T
Q  463 ttgagtatattttattaaggacaggaaa 490  Q
    ||||||  ||||||||||||| ||||||    
T  41529 ttgagtgaattttattaaggataggaaa 41556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 15164 - 15234
Alignment:
Q  421 aaattaagattataatcttatgttgttatttgatgtgtgct-tttgagtatattttattaaggacaggaaa 490  Q
    |||||||||||||||| |||| | ||||||| ||||||||| |||||||  ||||||||||||| ||||||    
T  15164 aaattaagattataatgttatttggttatttaatgtgtgctctttgagtgaattttattaaggataggaaa 15234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 23885 - 23954
Alignment:
Q  421 aaattaagattataatcttatgttgttatttgatgtgtgcttttgagtatattttattaaggacaggaaa 490  Q
    |||||||||||||||| |||| | ||||||| ||||||||| || |||  ||||||||||||| ||||||    
T  23885 aaattaagattataatgttatttggttatttaatgtgtgctcttaagtgaattttattaaggataggaaa 23954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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