View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-16 (Length: 493)
Name: NF4630-Insertion-16
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Complemental strand, 33164041 - 33163566
Alignment:
| Q |
7 |
ataaatcatatcggcgcacttaggttaatctttgatgaaccgtagtaaagactaaagggtaagactcatctagaagaataaacttaatagcatcatacca |
106 |
Q |
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| T |
33164041 |
ataaatcatatcggcgcacttaggttaatctttgatgaaccgtagtaaagactaaagggtaagactcatctagaagaataaacttaatagcataatacca |
33163942 |
T |
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| Q |
107 |
tacaacattaataacatgcattgtcaagtattgttggactatcaagatatcaagtgcaatgnnnnnnnnnnnnnnnaatgattgttcatacgattataga |
206 |
Q |
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| T |
33163941 |
tacaacattaataacatgcattgtcaagtattgttagactatcaagatatcaagtgcaatgtatatgta-------aatgattgttcatacgattataga |
33163849 |
T |
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| Q |
207 |
tattagtctgtctatttatcttattatggcatgaggcgaggagaaaacagaaatggaaaaccttgaatatttaaatcgttggttggctcgaagcattcaa |
306 |
Q |
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| T |
33163848 |
tattagtct----atttatcttattatggcatgaggcgaggagaaaacagaaatggaaaaccttgaatatttaaatcgttggtcagctcgaagcattcaa |
33163753 |
T |
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| Q |
307 |
gtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattattcattggtaaatcaacacatcaaacgtgagaaaaggataaa |
406 |
Q |
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| T |
33163752 |
gtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataattattcattggtaaatcaacacatcaaacatgagaaaaggataaa |
33163653 |
T |
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| Q |
407 |
ttacatgataagaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccaccaacaca |
493 |
Q |
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| T |
33163652 |
ttacatgataagaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccaccaacaca |
33163566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 46162285 - 46162427
Alignment:
| Q |
245 |
aggagaaaacagaaatggaaaaccttgaatatttaaatcgttggttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctgg |
344 |
Q |
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| T |
46162285 |
aggagaatgcagaaactgaaaaccttgaatgtttaagtcgttggtgggctcgaagcattcaagtaagggatcctcgggaagggatctgcaaaatggctgg |
46162384 |
T |
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| Q |
345 |
taactccccctgcataattattcattggtaaatcaacacatcaa |
388 |
Q |
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| T |
46162385 |
aaacttcccctgcataaatattcattggt-aattaacacatcaa |
46162427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 46162488 - 46162558
Alignment:
| Q |
417 |
agaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccacc |
487 |
Q |
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| T |
46162488 |
agaaatttacctccggtacagaaagataacagcatatccagccttcagaaagtacctgcaaagtaaccacc |
46162558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 46162037 - 46162112
Alignment:
| Q |
88 |
acttaatagcatcataccatacaacattaataacatgcattgtcaagtattgttggactatcaagatatcaagtgcaatg |
167 |
Q |
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| T |
46162037 |
acttaatatcatcataccatacaacatgaataacatgcattgacaaatattat----ctatcaagatatcaagtgcaatg |
46162112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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