View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-18 (Length: 442)
Name: NF4630-Insertion-18
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 28036618 - 28036184
Alignment:
| Q |
8 |
gcagcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttccacctcttcttaaacttcttaaagaag |
107 |
Q |
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| T |
28036618 |
gcagcttcattggtttcattggcacgtgacaatgatcgttacggaaaactaattatagaagaaggtggtgttccacctcttcttaaacttcttaaagaag |
28036519 |
T |
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| Q |
108 |
gaagacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagcgttgaacatattgtgaattgtggtgtttgttcggt |
207 |
Q |
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| T |
28036518 |
gaagacttgatggacaagaaaacgctgcaagagcaattggattacttggtagagatccagaaagtgttgaacatattgtgaattgtggtgtttgttcggt |
28036419 |
T |
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| Q |
208 |
ttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcat |
307 |
Q |
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| T |
28036418 |
ttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcat |
28036319 |
T |
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| Q |
308 |
tttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctattacaaacaaacaaaacatgt |
407 |
Q |
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| T |
28036318 |
tttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctattaccaacaaacaaaacatgt |
28036219 |
T |
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| Q |
408 |
cctccttacattctctagttatggctagcaacacc |
442 |
Q |
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| T |
28036218 |
cctccttacattctcttgttatggctagcaacacc |
28036184 |
T |
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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 388
Target Start/End: Original strand, 8756715 - 8756910
Alignment:
| Q |
193 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
292 |
Q |
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| T |
8756715 |
tggtgtttgttctgtttttgcgaaaattcttaaagaaggtcctatgaaagttcaaggtgttgttgcttgggctgtttctgaacttgctgctaattatcct |
8756814 |
T |
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| Q |
293 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
388 |
Q |
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| T |
8756815 |
aaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
8756910 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 378
Target Start/End: Complemental strand, 32031687 - 32031502
Alignment:
| Q |
193 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
292 |
Q |
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| T |
32031687 |
tggtgtttgttctgttttcgcgaagattcttaaagaaggtcctatgaaagttcaagctgttgtagcttgggctgtttctgaacttgtttctaagtatcct |
32031588 |
T |
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| Q |
293 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaa |
378 |
Q |
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| T |
32031587 |
aaatgtcaagatgtttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaa |
32031502 |
T |
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