View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4630-Insertion-2 (Length: 1045)

Name: NF4630-Insertion-2
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4630-Insertion-2
NF4630-Insertion-2
[»] chr5 (7 HSPs)
chr5 (503-955)||(16831797-16832253)
chr5 (726-955)||(18156057-18156288)
chr5 (787-955)||(20024443-20024612)
chr5 (667-948)||(10624160-10624442)
chr5 (726-952)||(40932792-40933020)
chr5 (75-133)||(19327356-19327414)
chr5 (843-888)||(19212406-19212451)
[»] chr6 (18 HSPs)
chr6 (503-955)||(26460578-26461028)
chr6 (703-955)||(19272304-19272558)
chr6 (605-955)||(16597238-16597591)
chr6 (174-468)||(4842058-4842344)
chr6 (92-271)||(4804147-4804325)
chr6 (605-952)||(18258100-18258454)
chr6 (95-223)||(4797721-4797849)
chr6 (726-952)||(11794013-11794242)
chr6 (169-279)||(4805366-4805476)
chr6 (92-176)||(4815115-4815199)
chr6 (503-571)||(19272676-19272743)
chr6 (406-468)||(4846386-4846448)
chr6 (123-193)||(10775832-10775902)
chr6 (405-467)||(18727201-18727263)
chr6 (804-888)||(20440723-20440807)
chr6 (804-888)||(20438100-20438184)
chr6 (108-158)||(4665498-4665548)
chr6 (92-146)||(4824630-4824684)
[»] scaffold0417 (1 HSPs)
scaffold0417 (503-955)||(998-1440)
[»] chr1 (11 HSPs)
chr1 (503-816)||(27129946-27130256)
chr1 (726-955)||(27901933-27902163)
chr1 (726-955)||(4361632-4361864)
chr1 (811-955)||(27131704-27131850)
chr1 (726-955)||(2603474-2603712)
chr1 (726-951)||(4229853-4230080)
chr1 (787-955)||(21168335-21168504)
chr1 (726-955)||(21382035-21382266)
chr1 (842-955)||(21076589-21076704)
chr1 (844-955)||(16406766-16406879)
chr1 (845-955)||(21550555-21550666)
[»] chr2 (21 HSPs)
chr2 (600-955)||(21256467-21256820)
chr2 (726-955)||(34827617-34827848)
chr2 (611-955)||(10480392-10480740)
chr2 (605-950)||(37130190-37130541)
chr2 (605-928)||(23870539-23870865)
chr2 (730-955)||(25349267-25349497)
chr2 (726-952)||(28567715-28567942)
chr2 (728-952)||(23814987-23815215)
chr2 (687-928)||(22708049-22708286)
chr2 (788-955)||(22593716-22593885)
chr2 (760-955)||(21904964-21905160)
chr2 (726-952)||(23803357-23803589)
chr2 (854-955)||(23769375-23769478)
chr2 (877-952)||(23829835-23829912)
chr2 (844-948)||(20524168-20524274)
chr2 (843-888)||(30051963-30052008)
chr2 (843-888)||(30089978-30090023)
chr2 (843-888)||(30126583-30126628)
chr2 (843-888)||(30143007-30143052)
chr2 (503-563)||(10480787-10480845)
chr2 (501-573)||(28568078-28568150)
[»] scaffold0168 (1 HSPs)
scaffold0168 (605-955)||(1396-1750)
[»] scaffold0012 (2 HSPs)
scaffold0012 (628-952)||(250076-250399)
scaffold0012 (503-591)||(250417-250505)
[»] chr7 (7 HSPs)
chr7 (605-955)||(40342844-40343191)
chr7 (726-955)||(10827787-10828019)
chr7 (726-955)||(11021579-11021811)
chr7 (726-909)||(24876404-24876589)
chr7 (605-820)||(13346726-13346944)
chr7 (64-129)||(3665212-3665277)
chr7 (730-827)||(10864085-10864181)
[»] scaffold0077 (1 HSPs)
scaffold0077 (605-955)||(12110-12465)
[»] chr3 (3 HSPs)
chr3 (605-955)||(132442-132788)
chr3 (727-952)||(43135576-43135804)
chr3 (843-888)||(55002423-55002468)
[»] chr8 (9 HSPs)
chr8 (688-952)||(15337192-15337453)
chr8 (688-952)||(15426257-15426518)
chr8 (688-952)||(15517561-15517822)
chr8 (665-955)||(27818043-27818334)
chr8 (760-955)||(15911661-15911857)
chr8 (726-952)||(22698094-22698322)
chr8 (768-955)||(18735327-18735514)
chr8 (502-568)||(15911406-15911472)
chr8 (810-888)||(22698790-22698868)
[»] scaffold0151 (1 HSPs)
scaffold0151 (667-952)||(14139-14421)
[»] chr4 (9 HSPs)
chr4 (732-955)||(10267142-10267365)
chr4 (760-955)||(49526455-49526654)
chr4 (733-952)||(1658509-1658726)
chr4 (667-952)||(18567001-18567281)
chr4 (793-955)||(31079753-31079919)
chr4 (809-888)||(27812389-27812468)
chr4 (843-955)||(50687566-50687680)
chr4 (503-558)||(50687230-50687285)
chr4 (499-563)||(49526857-49526919)
[»] scaffold0190 (1 HSPs)
scaffold0190 (605-952)||(7206-7560)
[»] scaffold0480 (1 HSPs)
scaffold0480 (726-952)||(3605-3832)
[»] scaffold0297 (1 HSPs)
scaffold0297 (760-955)||(8772-8969)
[»] scaffold0029 (1 HSPs)
scaffold0029 (787-955)||(101996-102165)
[»] scaffold0770 (1 HSPs)
scaffold0770 (787-955)||(3692-3861)
[»] scaffold0100 (1 HSPs)
scaffold0100 (787-955)||(8955-9124)
[»] scaffold0096 (1 HSPs)
scaffold0096 (667-944)||(36180-36454)
[»] scaffold0063 (1 HSPs)
scaffold0063 (782-955)||(70604-70779)
[»] scaffold0014 (1 HSPs)
scaffold0014 (786-923)||(7399-7536)
[»] scaffold1898 (1 HSPs)
scaffold1898 (505-568)||(1026-1089)
[»] scaffold0035 (1 HSPs)
scaffold0035 (843-888)||(25812-25857)
[»] scaffold0016 (1 HSPs)
scaffold0016 (843-885)||(200148-200189)
[»] scaffold0504 (1 HSPs)
scaffold0504 (843-888)||(683-728)
[»] scaffold0239 (2 HSPs)
scaffold0239 (843-888)||(5572-5617)
scaffold0239 (899-955)||(16984-17041)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 503 - 955
Target Start/End: Original strand, 16831797 - 16832253
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattcttatgtattt 602  Q
    |||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  16831797 tgttagccaatatttttaaagagctatcttaaatgcagtcaaaccaaggttgaccttataatcgaagaaataaagaatgctctcttattcttatgcattt 16831896  T
Q  603 aaatcgaagttggacttgctggaaatgctcgaagcacatgtttcagttcgacagacgaatggtatcgaagggcagttttgttttggataaggtcaagcaa 702  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||||||    
T  16831897 aaatcgaagttagacttgctggaaatgctcgaagcgcgtgtttcagttcaacagacgta-ggtatcgaaaggcag-tttgttttggataaggtcaagcaa 16831994  T
Q  703 cagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaata----taggta 798  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||||||    |||| |    
T  16831995 cggatatttccaaaggcgcacatattcgaaattcaaatcgaatggataagtgttgttcgtttttagccgttgtaatttcaaattcaaatatagctaggaa 16832094  T
Q  799 gttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag 898  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  16832095 gttatttctattagtataaatagtagtttctcgcaagggaacgtgatcacaatccaatcatacacaaaacttacactcaaattatccgcattgaagagag 16832194  T
Q  899 -aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
     |||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  16832195 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 16832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 726 - 955
Target Start/End: Original strand, 18156057 - 18156288
Alignment:
Q  726 attcgaaattcaaa-tcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatag 824  Q
    |||||||||||||| ||||||||||| || | ||| |||  | ||| || |||||| ||||| |||| |||| |||||||| |||| ||||||||| |||    
T  18156057 attcgaaattcaaaatcgaatggataagtttcgttagttact-gcatttatagttttaaatttaaatctaggcagttatttctatttgtataaatagtag 18156155  T
Q  825 tttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatg 922  Q
     || ||  |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| |||||| |||||||    
T  18156156 cttttcctaaggaaaaaaggtcacaatccaatcatacacaaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtatg 18156255  T
Q  923 aacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||  || ||| ||||||| ||||||||||||||    
T  18156256 aatctgtgtaccaatttatattcaatcaatgca 18156288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 787 - 955
Target Start/End: Complemental strand, 20024612 - 20024443
Alignment:
Q  787 caaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    ||||| |||| |||||||| |||  ||||||||| |||||||||  |||| |||  ||||||||| |||||||||| |||||||||||||||||||||||    
T  20024612 caaatctaggcagttatttctatctgtataaatagtagtttctcttaaggaaaaagggtcacaattcaatcataca-aaaacttacactcaaattatccg 20024514  T
Q  887 caaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||  |||||||| |||||||||| |||||| ||||||||| ||| ||| |||| |||||||||||||||||    
T  20024513 catggaagagagaaacgagtcacaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgca 20024443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 667 - 948
Target Start/End: Original strand, 10624160 - 10624442
Alignment:
Q  667 tcgaagggcagttttgttttggataaggtcaag-caacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgttta 765  Q
    ||||||||||||||  ||||||||||||||||  |||| ||||||| |||      ||| ||||||||||||||||||||||||| || | ||| |||      
T  10624160 tcgaagggcagtttctttttggataaggtcaaaacaacggatattttcaag-----acacattcgaaattcaaatcgaatggataagtttcgttagttac 10624254  T
Q  766 tagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaat-aatagt--ttctcgcaagggaaagt--ggtcacaatccaatcata 860  Q
    | |||||| |||||| ||||||||||||||| |||||||| |||| |||||||| ||||||  || |  | |||||||    ||||||||| | ||||||    
T  10624255 t-gcagttatagttttaaattcaaatataggcagttatttctatttgtataaattaatagtagtttttcctagggaaaaaagggtcacaattctatcata 10624353  T
Q  861 cacaaaacttacactcaaattatccgcaaagaagagagaac-gagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaat 948  Q
    || |||||||||||||||||||||||||  ||||||| ||  |||||||| ||||| ||||||||||||| ||| |||||||||||||||    
T  10624354 ca-aaaacttacactcaaattatccgcatggaagagataaatgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaat 10624442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 726 - 952
Target Start/End: Original strand, 40932792 - 40933020
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || | ||| |||||  | |||| |||||| | |||||||| |||  ||||||||  ||| ||||||||| ||||    
T  40932792 attcgaaattcaaatcgaatggataagtatcgttagtttactgtagttatagttttagattcaaatctagacagttatttcaatttgtataaatagtagt 40932891  T
Q  826 ttctcgcaaggg-aaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaacgagtcac-agttgctatgtatg 922  Q
    || || | |||| |||  ||||||||| | |||||||| |||||| |||||||||||||| |||  |||||||  |||||||||| |||||| |||||||    
T  40932892 tt-tccctagggaaaaagggtcacaattctatcatacaaaaaactaacactcaaattatctgcatggaagagataaacgagtcacaagttgcaatgtatg 40932990  T
Q  923 aacatgcgtaacaatttacattcaatcaat 952  Q
    || ||| ||| |||||||||||||||||||    
T  40932991 aatatgtgtaccaatttacattcaatcaat 40933020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 19327356 - 19327414
Alignment:
Q  75 ccattgatggaccccccacatatccagcaccaatgcagcaaatcttctccattttttct 133  Q
    |||||| |||||| || ||||| ||||| |||||||| ||||||||| |||||||||||    
T  19327356 ccattgttggaccaccaacatagccagctccaatgcaacaaatcttcaccattttttct 19327414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 888
Target Start/End: Original strand, 19212406 - 19212451
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||| | |||||||||||||||| ||||||||    
T  19212406 ggtcacaattcaatcatataaaaaacttacactcaaactatccgca 19212451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 503 - 955
Target Start/End: Complemental strand, 26461028 - 26460578
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattcttatgtattt 602  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||  ||||||||||||    
T  26461028 tgttagccaatatttttaagag-ctatcttaaatgcagtcaaaacaaggttgaccttataatcgaagaaataaagaatgctcttttgctcttatgtattt 26460930  T
Q  603 aaatcgaagttggacttgctggaaatgctcgaagcacatgtttcagttcgacagacgaatg-gtatcgaagggcagttttgttttggataaggtcaagca 701  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||||||||||  |||| ||||||||| ||||||| |||| |||||||||||||||    
T  26460929 aaatcgaagttggacttggtggaaatgctcgaagcgcgtgtttcagttcgacaga--aatgagtatcgaagagcagttt-gtttcggataaggtcaagca 26460833  T
Q  702 acagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagtt 801  Q
    ||  |||||||| | |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  26460832 acgaatatttccga-ggcgcatatattcgaaattcaaatcgaatggataagtattgttagtttatagcagttgtagtttcaaattcaaatataggtagtt 26460734  T
Q  802 atttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaa 900  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||    
T  26460733 atttctattagtataaatagtagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcatggaagagataaa 26460634  T
Q  901 cgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  26460633 cgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 26460578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 703 - 955
Target Start/End: Complemental strand, 19272558 - 19272304
Alignment:
Q  703 cagatatttccaaaggcgcacatattcgaaa-ttcaaatcgaatggataggtgttg-ttcgtttatagcagttgtagtttcaaattcaaatataggtagt 800  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||  || ||||||| || |||||||||||||||||||| ||||||||| |||||||||    
T  19272558 cagatatttccaa-ggcgcgcatattcgaaaattcaaatcgaatatatgggtgttggttagtttatagcagttgtagttttaaattcaaacataggtagt 19272460  T
Q  801 tatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-a 899  Q
    ||| | |||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| |||  |||||||| |    
T  19272459 tatgtctattagtataaatagtagtttctcgcaagagaaaacggtcacaatccaatcatacacaaaacttacactcaaattatctgcatggaagagagaa 19272360  T
Q  900 acgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  19272359 acgagtcacaagttgc-atgtatgaacatgtgtaccaatttacattcaatcaatgca 19272304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 605 - 955
Target Start/End: Complemental strand, 16597591 - 16597238
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaagcacatgtttcagttcgacagacgaatggtatcgaagggcagttttgttttg-----gataaggtcaag 699  Q
    ||||||||||||||||||||| ||||||||||| |  ||||||||||||||| | || | |||||||| ||||||||||||||     |||||||||| |    
T  16597591 atcgaagttggacttgctggagatgctcgaagcgcgcgtttcagttcgacaggcaaaagttatcgaagagcagttttgttttgtcttggataaggtcatg 16597492  T
Q  700 c-aacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggta 798  Q
    | ||| ||||||| ||| |     || |||||||||||||||| |||||||| |||||||| |||||   ||||| |||||| |||||||||| ||||||    
T  16597491 ccaacggatatttgcaagg-----cacattcgaaattcaaatcaaatggataagtgttgttagtttactacagttatagttttaaattcaaatctaggta 16597397  T
Q  799 gttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag 898  Q
    ||||||| |||| |||||  || |||||| ||  |||| |||  ||| |||||||||||||| | |||||||||||||||||||||||||  ||||| ||    
T  16597396 gttatttctatttgtatacgtagtagtttttcctaaggaaaacaggtgacaatccaatcatataaaaaacttacactcaaattatccgcatggaagaaag 16597297  T
Q  899 -aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
     ||||||| || |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  16597296 aaacgagtgacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 16597238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 174 - 468
Target Start/End: Original strand, 4842058 - 4842344
Alignment:
Q  174 atacaattatgcaacgaaaactaatttgatcattttaaataacaatcacaatgaagttttggtcacgttttgatttttattattgtggagaattgtgatc 273  Q
    |||||| ||||||| |||  ||| ||||||| |||||||||||||||||| |||||||||||||      | ||  |||||||| || ||| ||||||||    
T  4842058 atacaagtatgcaatgaatgctattttgatcgttttaaataacaatcacagtgaagttttggtc------taatccttattattctg-agagttgtgatc 4842150  T
Q  274 taatgcagctgatgccgcctcaattgtgatcgcactgtagtttcacgactcagatcatggtcataaaaaattgttatatagttttagcaacatcaaaaac 373  Q
     ||||  || ||||||||||||||| |||||||| |||||||||||  ||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||    
T  4842151 aaatgtggccgatgccgcctcaattatgatcgcattgtagtttcacagctcagatgatggtcataaaaaatcgttgtatagttttagcaacataaaaaac 4842250  T
Q  374 agttatgttacggatcgaatcacggtcatagacctttatttaaaactcttaaataatttgctcctcttcttctacaatcgcaaaacaattacaac 468  Q
     ||||||| |||| ||| ||||| ||| ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||  |||||| |||||||    
T  4842251 cgttatgtcacggctcggatcac-gtcgtagacctttgtttaaaactcttcaataatttgctcctctttttctagaatcataaaacagttacaac 4842344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 92 - 271
Target Start/End: Original strand, 4804147 - 4804325
Alignment:
Q  92 acatatccagcaccaatgcagcaaatcttctccattttttctttcctaacatatccacagtggtgttaaaatgtatcagtaaatacaattatgcaacgaa 191  Q
    ||||||| || | ||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| |||||||| ||| |||||||||||| | | ||    
T  4804147 acatatctagtatcaatgcagcaaatcttcaccattctttctttcctaacctatccacactggtgttcaaatgtattagtgaatacaattatggagcaaa 4804246  T
Q  192 aactaatttgatcattttaaataacaatcacaatgaagttttggtcacgttttgatttttattattgtggagaattgtga 271  Q
    | |||||||| || |||| |||| ||||||| |||||||||| |||||||||||||  ||| ||||||||||||| ||||    
T  4804247 agctaatttggtcgtttt-aatagcaatcacgatgaagtttttgtcacgttttgatcgttaatattgtggagaatcgtga 4804325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 605 - 952
Target Start/End: Complemental strand, 18258454 - 18258100
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagac-gaatggtatcgaagggcagttttgttttggat------aaggtc 696  Q
    |||||||||||||||| |||| || |||||| || | |||||| ||||||||||| ||| | |||| ||||||||||||||| |||||      ||||||    
T  18258454 atcgaagttggacttgttggagatactcgaaagcgcgtgtttcggttcgacagacagaaagttatcaaagggcagttttgttatggatttagataaggtc 18258355  T
Q  697 aa-gcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatatag 795  Q
    || ||||| | |||||   |||    ||| ||||||||||||||||||||||||| || | ||| || ||| |||||| |||||| |||||||||| |||    
T  18258354 aaagcaacgggtatttttcaag----acacattcgaaattcaaatcgaatggataagtatagttagtatattgcagttatagttttaaattcaaatctag 18258259  T
Q  796 gtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaaga 895  Q
    | |||||||| |||| ||||||||| ||||||  |  |    |||  ||||||||| || | ||||| |||| ||||||||||||||||||||   ||||    
T  18258258 gcagttatttctatttgtataaatagtagttttccttagaaaaaaagggtcacaattcattaatacaaaaaagttacactcaaattatccgcatgaaaga 18258159  T
Q  896 gagaa-cgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||||| ||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||    
T  18258158 gagaaacgagtcacaagttgcaatgtatgaacatgtgtatcaatttacattcaatcaat 18258100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 4797849 - 4797721
Alignment:
Q  95 tatccagcaccaatgcagcaaatcttctccattttttctttcctaacatatccacagtggtgttaaaatgtatcagtaaatacaattatgcaacgaaaac 194  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||  | |||      
T  4797849 tatccagcaccaatgcagcaaatcttcacaatttttcctttcctaacctatccacagtggtgttcaaatgtatcaataaatacaattatgctgcaaaagt 4797750  T
Q  195 taatttgatcattttaaataacaatcaca 223  Q
    |||||||||| || ||||||| |||||||    
T  4797749 taatttgatcgttgtaaataataatcaca 4797721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 726 - 952
Target Start/End: Original strand, 11794013 - 11794242
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgttt-atagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatag 824  Q
    |||||||||| ||||||||||||||  ||| ||| |||| || |||||| |||||| |||||||||| |||| |||||||| |||  ||||||||| |||    
T  11794013 attcgaaatttaaatcgaatggataaatgtagttagttttattgcagttatagttttaaattcaaatgtaggcagttatttctatatgtataaatagtag 11794112  T
Q  825 tttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaacgagtcac-agttgctatgtatg 922  Q
    |||  |  | |  |||  ||||||||| |||| ||||| |||| ||||||||||||||||||||  ||||| |  ||||| |||| |||||| |||||||    
T  11794113 ttttccataggaaaaaagggtcacaattcaattatacaaaaaatttacactcaaattatccgcatggaagatataaacgaatcacaagttgcaatgtatg 11794212  T
Q  923 aacatgcgtaacaatttacattcaatcaat 952  Q
    |||||| ||| ||| |||||||||||||||    
T  11794213 aacatgtgtaccaacttacattcaatcaat 11794242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 4805366 - 4805476
Alignment:
Q  169 agtaaatacaattatgcaacgaaaactaatttgatcattttaaataacaatcacaatgaagttttggtcacgttttgatttttattattgtggagaattg 268  Q
    |||||||||||| |||||||||||  || ||||||| |||||||||| | ||| | ||||||||||||||| |||||||  ||| |||||||||||| ||    
T  4805366 agtaaatacaataatgcaacgaaagatagtttgatcgttttaaataatagtcaaagtgaagttttggtcacattttgatccttactattgtggagaactg 4805465  T
Q  269 tgatctaatgc 279  Q
    ||||| |||||    
T  4805466 tgatcaaatgc 4805476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 4815115 - 4815199
Alignment:
Q  92 acatatccagcaccaatgcagcaaatcttctccattttttctttcctaacatatccacagtggtgttaaaatgtatcagtaaata 176  Q
    |||||| || |||| ||||||||||||||| |||||||| ||| |||||| |||||||||||||||| || ||||||||||||||    
T  4815115 acatatacaacaccgatgcagcaaatcttcaccatttttccttgcctaacctatccacagtggtgttgaagtgtatcagtaaata 4815199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 503 - 571
Target Start/End: Complemental strand, 19272743 - 19272676
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaa 571  Q
    |||||||||||||||| || |||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  19272743 tgttagccaatattttaaa-aggctatcataaatgcagtcaaactaaagttgaacttataatcgaagaa 19272676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 406 - 468
Target Start/End: Original strand, 4846386 - 4846448
Alignment:
Q  406 cctttatttaaaactcttaaataatttgctcctcttcttctacaatcgcaaaacaattacaac 468  Q
    |||||||||||||| ||| |||||||||||| |||||||||| |||| |||||||||||||||    
T  4846386 cctttatttaaaacccttcaataatttgctcatcttcttctagaatcacaaaacaattacaac 4846448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 10775832 - 10775902
Alignment:
Q  123 ccattttttctttcctaacatatccacagtggtgttaaaatgtatcagtaaatacaattatgcaacgaaaa 193  Q
    |||||||| |||||||||| |||||| ||||||||| |||||||| |||||||||||| ||||||| ||||    
T  10775832 ccatttttcctttcctaacctatccatagtggtgttcaaatgtattagtaaatacaataatgcaacaaaaa 10775902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 18727201 - 18727263
Alignment:
Q  405 acctttatttaaaactcttaaataatttgctcctcttcttctacaatcgcaaaacaattacaa 467  Q
    ||||||||||||||||||| |||||||  ||||||| |||||| |||| ||||||||||||||    
T  18727201 acctttatttaaaactctttaataattgtctcctctacttctagaatcacaaaacaattacaa 18727263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 888
Target Start/End: Original strand, 20440723 - 20440807
Alignment:
Q  804 ttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    |||| ||||||||||||| ||||||||  | || |||| ||||||||| || ||||| | |||||||||||||||| ||||||||    
T  20440723 tttttttagtataaataacagtttctcatagggaaaagaggtcacaatacattcatatagaaaacttacactcaaactatccgca 20440807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 804 - 888
Target Start/End: Original strand, 20438100 - 20438184
Alignment:
Q  804 ttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    |||| ||||||||||||| ||||||||  | || |||| ||||||||| || ||||| | |||||||||||||||| || |||||    
T  20438100 tttttttagtataaataacagtttctcatagggaaaagaggtcacaatacattcatatagaaaacttacactcaaactacccgca 20438184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 4665498 - 4665548
Alignment:
Q  108 tgcagcaaatcttctccattttttctttcctaacatatccacagtggtgtt 158  Q
    |||||||||||||  |||||||| |||||||||| ||||||||| ||||||    
T  4665498 tgcagcaaatctttaccatttttcctttcctaacctatccacagcggtgtt 4665548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 4824630 - 4824684
Alignment:
Q  92 acatatccagcaccaatgcagcaaatcttctccattttttctttcctaacatatc 146  Q
    ||||||||||||| |||||| ||||||||| || |||||||||| ||||| ||||    
T  4824630 acatatccagcactaatgcaacaaatcttcaccgttttttcttttctaacctatc 4824684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 503 - 955
Target Start/End: Original strand, 998 - 1440
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattcttatgtattt 602  Q
    |||||||| ||||||| ||  |||||||||||||| ||||||| ||| ||||||||| | |||||||||||||||||| || |||||||| ||  |||||    
T  998 tgttagcctatattttaaaagggctatcttaaatgtagtcaaatcaaggttgaccttgtcatcgaagaaataaagaatactctcttattcctaaatattt 1097  T
Q  603 aaatcgaagttggacttgctggaaatgctcgaagcacatgtttcagttcgacagacgaatggtatcgaagggcagttttgttttggataaggtcaagcaa 702  Q
    |||||||||||||||||||| |||||||||||||||| | |||||||||||||  | |  |||||||||||||||||| |||| |||||||||||| |||    
T  1098 aaatcgaagttggacttgctcgaaatgctcgaagcacgtatttcagttcgacaagcaagaggtatcgaagggcagttt-gtttcggataaggtcaaacaa 1196  T
Q  703 cagatatttccaaaggcgcacatattcgaaattcaaa-tcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagtt 801  Q
    | |||            |||||||||||||||||||| |||||| ||||     ||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  1197 cggat------------gcacatattcgaaattcaaaatcgaatagataaacactgttcatttatagcagttgtaatttcagattcaaatataggtagtt 1284  T
Q  802 atttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aa 900  Q
    |||| |||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||    
T  1285 atttctattagtaaaaatagtagtttctctcaagggaaagtggttacaatccaatcatacacaaaacttacactcaaattattcgcatggaagagagaaa 1384  T
Q  901 cgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||| |||||| |||||||| |||| ||| ||||||||||||||||||||||    
T  1385 cgagtcacaagttgcaatgtatgatcatgtgtaccaatttacattcaatcaatgca 1440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 7e-92; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 503 - 816
Target Start/End: Original strand, 27129946 - 27130256
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattcttatgtattt 602  Q
    ||||||||||||||||||||  |||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  27129946 tgttagccaatatttttaaggagctattataaatgcagtcaaaccaaggttgaccttataaccgaagaaataaagaatgctctcttattcttatgtattt 27130045  T
Q  603 aaatcgaagttggacttgctggaaatgctcgaagcacatgtttcagttcgacagacgaatg-gtatcgaagggcagttttgttttggataaggtcaagca 701  Q
    |||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||  ||  |||||||| |||| ||||||| |||||||||||||||    
T  27130046 aaattgaagttggacttgctggaaatgcttgaagcgcgtgtttcagttcgacagacg--tgaatatcgaagagcag-tttgtttcggataaggtcaagca 27130142  T
Q  702 acagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagtt 801  Q
    ||  |||||||| ||||| ||  ||||||||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||    
T  27130143 acgaatatttcc-aaggcacatgtattcgaaattcaaatccaatagataagtgttgttagtttatagcagttttagtttcaaattcaaatataggtattt 27130241  T
Q  802 atttttattagtata 816  Q
    |||| |||| |||||    
T  27130242 atttctattcgtata 27130256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 726 - 955
Target Start/End: Original strand, 27901933 - 27902163
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || ||||| |||  || || |  |||||| |||||||||| |||| |||||||| |||| ||||||||| ||||    
T  27901933 attcgaaattcaaatcgaatggataagttttgttagttacta-caatcatagttttaaattcaaatctaggcagttatttctatttgtataaatagtagt 27902031  T
Q  826 ttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatga 923  Q
    || || |||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| || ||||||| |||||| ||||||||    
T  27902032 ttttcccaagggaaaaaggtcacaatccaatcatacacaaaacttacactcaaattatccacatggaagagagaaaggagtcacaagttgcaatgtatga 27902131  T
Q  924 acatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||| ||| ||||||||||||||||||||||    
T  27902132 acatgtgtaccaatttacattcaatcaatgca 27902163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 726 - 955
Target Start/End: Complemental strand, 4361864 - 4361632
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || ||||| |||||  |||||| |||||| ||||| |||| || |||||||||| |||| ||||||||| ||||    
T  4361864 attcgaaattcaaatcgaatggataagtattgttagtttactgcagttatagttttaaattgaaatctatgtagttatttctatttgtataaatagtagt 4361765  T
Q  826 ttctcgcaagggaaagt-ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatg 922  Q
    || || | || ||||   ||||||||| |||||||||| |||||||| ||||||||||||||||  |||||||| ||||||| || |||||| || ||||    
T  4361764 ttttccctagcgaaaaaaggtcacaattcaatcatacaaaaaacttatactcaaattatccgcatggaagagagaaacgagtaacaagttgcaatatatg 4361665  T
Q  923 aacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||| ||| ||||||||||||||||||||||    
T  4361664 aacatgtgtaccaatttacattcaatcaatgca 4361632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 811 - 955
Target Start/End: Original strand, 27131704 - 27131850
Alignment:
Q  811 agtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac- 908  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||     
T  27131704 agtataaatagtagtttatcgcaagggaaagtggtcacaatcctatcatacacaaaacttacactcaaattatcctcatggaagagagaaacgagtcaca 27131803  T
Q  909 agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||  |||||||||||| ||| |||||||||| |||||||||||    
T  27131804 agttgcactgtatgaacatgtgtaccaatttacatccaatcaatgca 27131850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 726 - 955
Target Start/End: Complemental strand, 2603712 - 2603474
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaa------t 819  Q
    ||||||||||||||| ||||||||| || ||||| |||||  |||||| |||||| |||||||||| ||||||||||||| |||| |||||||      |    
T  2603712 attcgaaattcaaatagaatggataagtattgttagtttactgcagttatagttttaaattcaaatctaggtagttatttctatttgtataaatagtagt 2603613  T
Q  820 aatagtttctc-gcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgag-tcac-agttgct 915  Q
    | |||||| || | | || |||  ||| ||||| |||||||||| |||||||| ||||||||||||||||  |||||||| |||||| |||| ||||||     
T  2603612 agtagtttttctgtagggaaaaagggttacaattcaatcataca-aaaacttaaactcaaattatccgcatggaagagagaaacgagatcacaagttgca 2603514  T
Q  916 atgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||||||||  || ||||||||||||||||||||||    
T  2603513 atgtatgaacatgtataccaatttacattcaatcaatgca 2603474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 726 - 951
Target Start/End: Complemental strand, 4230080 - 4229853
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || | ||| |||||  |||||| |||||| | |||||||| |||| |||||||| |||| ||||||||| ||||    
T  4230080 attcgaaattcaaatcgaatggataagtttcgttagtttactgcagttatagttttagattcaaatctaggcagttatttctatttgtataaatagtagt 4229981  T
Q  826 ttctcgcaagg-gaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaacgagtcac-agttgctatgtatg 922  Q
    || || | ||| ||||  ||||||||| | |||||||| | ||||||| |||||| ||||||||  |||||||  |||||||||| |||||| |||||||    
T  4229980 tt-tccctaggagaaaagggtcacaattctatcatacaaataacttacgctcaaactatccgcatggaagagataaacgagtcacaagttgcaatgtatg 4229882  T
Q  923 aacatgcgtaacaatttacattcaatcaa 951  Q
    || ||| ||| ||| ||||||||||||||    
T  4229881 aatatgtgtaccaacttacattcaatcaa 4229853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 787 - 955
Target Start/End: Complemental strand, 21168504 - 21168335
Alignment:
Q  787 caaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    ||||| |||| |||||||| |||| ||||||||| |||||| ||  || | |||  ||||||||| |||||||||| |||||||||||||||||||||||    
T  21168504 caaatctaggcagttatttctatttgtataaatagtagtttttcttaacgaaaaagggtcacaattcaatcataca-aaaacttacactcaaattatccg 21168406  T
Q  887 caaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||  |||||||| |||||||||| |||||| ||||||||| ||| ||| |||| |||||||||||||||||    
T  21168405 catggaagagagaaacgagtcacaagttgcaatgtatgaatatgtgtagcaatctacattcaatcaatgca 21168335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 726 - 955
Target Start/End: Complemental strand, 21382266 - 21382035
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| ||  |||| |||  | |||||| ||||||  |||| |||| |||| | |||| | |||| ||||||||| | ||    
T  21382266 attcgaaattcaaatcgaatggataagttctgttagttact-gcagttatagtttttaatttaaatttaggcaattatctctatttgtataaatagtggt 21382168  T
Q  826 ttc-tcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatg 922  Q
    ||| ||  |||| |||| |||||| || |||||||||| ||| |||||||||||||||| ||||  |||||||| |||||||||| |||| | |||||||    
T  21382167 ttcctccaaaggaaaaggggtcacgattcaatcatacaaaaagcttacactcaaattattcgcatggaagagagaaacgagtcacaagttacaatgtatg 21382068  T
Q  923 aacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||| ||| |||| || |||| |||||||||    
T  21382067 aacatgtgtaccaatctatattcgatcaatgca 21382035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 842 - 955
Target Start/End: Original strand, 21076589 - 21076704
Alignment:
Q  842 tggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaacgagtca-cagttgctatgtatgaacatgcgtaacaattt 939  Q
    |||||||||| |||||||||  ||||||||||||||||||||||| |  |||| ||   ||||||||  |||||| ||||||||| ||| ||| ||| ||    
T  21076589 tggtcacaattcaatcatactaaaaacttacactcaaattatccgtatggaagcgactgacgagtcataagttgcaatgtatgaatatgtgtaccaactt 21076688  T
Q  940 acattcaatcaatgca 955  Q
    ||||||||||||||||    
T  21076689 acattcaatcaatgca 21076704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 844 - 955
Target Start/End: Complemental strand, 16406879 - 16406766
Alignment:
Q  844 gtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagagaa-cgagtcaca-gttgctatgtatgaacatgcgtaacaatttac 941  Q
    ||||||| || ||||||||| ||||||||||| ||| ||||| ||   ||||||||| ||||||||| |||   ||||||||||||| ||| ||||| ||    
T  16406879 gtcacaaaccgatcatacacgaaacttacacttaaactatccacattcaagagagaaacgagtcacaagttataatgtatgaacatgtgtaccaattgac 16406780  T
Q  942 attcaatcaatgca 955  Q
    ||||||||||||||    
T  16406779 attcaatcaatgca 16406766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 845 - 955
Target Start/End: Original strand, 21550555 - 21550666
Alignment:
Q  845 tcacaatccaatcatacacaaaacttacactcaaattatccgcaaaga-agagagaacgagtcac-agttgctatgtatgaacatgcgtaacaatttaca 942  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||   | ||||| ||||||| || |||  | ||||||||| ||| ||| |||||||||    
T  21550555 tcacaattcaatcatacagaaaacttacactcaaactatccgcattcagagaga-aacgagtaacaagtcacaatgtatgaatatgtgtaccaatttaca 21550653  T
Q  943 ttcaatcaatgca 955  Q
    |||||||||||||    
T  21550654 ttcaatcaatgca 21550666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 600 - 955
Target Start/End: Complemental strand, 21256820 - 21256467
Alignment:
Q  600 tttaaatcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacgaat--ggtatcgaagggcagttttgtt-----ttggata 691  Q
    |||| ||| ||||||||||||||| ||||||||||| || | ||||| |||||||||| ||||   | ||||||||||||||||||||     |||||||    
T  21256820 tttatatcaaagttggacttgctgaaaatgctcgaaagcgcgtgttttagttcgacaggcgaaaaagttatcgaagggcagttttgttgtggtttggata 21256721  T
Q  692 aggtcaagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaat 791  Q
    ||||||||||||  |||||| |||      ||| |||| |||||||||||||||||||| || ||||| |||||   ||||| |||||| ||||| ||||    
T  21256720 aggtcaagcaacgaatattttcaag-----acacattcaaaattcaaatcgaatggataagtattgttagtttaccacagttatagttttaaatttaaat 21256626  T
Q  792 ataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaag 891  Q
    |||||||||||||| |||| ||||||||| ||||||  |  |||| |||||||||||||| |||||||||| |||||||||||||||||||||||||  |    
T  21256625 ataggtagttatttctatttgtataaatagtagttttccctaaggaaaagtggtcacaattcaatcatacaaaaaacttacactcaaattatccgcatgg 21256526  T
Q  892 aagagag-aacgagtcacagttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||| |||||||||||      ||||||||||||| ||| ||||||||||||||||||||||    
T  21256525 aagagagaaacgagtcaca------atgtatgaacatgtgtaccaatttacattcaatcaatgca 21256467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 726 - 955
Target Start/End: Complemental strand, 34827848 - 34827617
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || ||||| |||||  |||||| |||||| |||||||||| ||||||||||||| ||||  |||||||| ||||    
T  34827848 attcgaaattcaaatcgaatggataagtattgttagtttaccgcagttatagttttaaattcaaatctaggtagttatttctatttatataaatagtagt 34827749  T
Q  826 ttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatga 923  Q
    || || | ||| |||  ||||||||| |||||||||| ||||||||||||||||||||| |||  |||||||| |||||||||| |||||  ||||||||    
T  34827748 ttttccctaggaaaaagggtcacaattcaatcatacaaaaaacttacactcaaattatctgcatggaagagagaaacgagtcacaagttgtaatgtatga 34827649  T
Q  924 acatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||| ||| ||||||||||||||||||||||    
T  34827648 acatgtgtaccaatttacattcaatcaatgca 34827617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 611 - 955
Target Start/End: Complemental strand, 10480740 - 10480392
Alignment:
Q  611 gttggacttgctggaaatgctcgaagcacatgtttcagttcgacagacg--aatggtatcgaagggcagttttgttttggataaggtcaagcaacagata 708  Q
    ||||||||||||||||||||||||| |  |  |||||||||||||||||  ||   |||||||| ||||||   || ||||||| ||||||||||| ||     
T  10480740 gttggacttgctggaaatgctcgaaacgtagatttcagttcgacagacggaaaaaatatcgaagagcagttcgtttctggataaagtcaagcaacatatg 10480641  T
Q  709 tttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttattttta 808  Q
    ||| |||  |  || || || ||| ||| ||||||| |||||  || ||| ||||||||| ||||||||||||||||   ||| ||||||||||||| ||    
T  10480640 ttttcaagaga-cagatgtttgaatttcgaatcgaacggatatctgatgtccgtttatagtagttgtagtttcaaatcttaatgtaggtagttatttcta 10480542  T
Q  809 ttagtataaataatagtttctcgcaaggg-aaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtc 906  Q
    |||||||||||| |||||| ||   |||| |||  |||||||||||||||||||||||||||||||||| || ||||||||   ||||||| ||| ||||    
T  10480541 ttagtataaatagtagtttttccttaggggaaaagggtcacaatccaatcatacacaaaacttacactcgaactatccgcattcaagagagaaacaagtc 10480442  T
Q  907 ac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
     | |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  10480441 gcaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 10480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 605 - 950
Target Start/End: Original strand, 37130190 - 37130541
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacgaat--ggtatcgaagggcagttttgttttgg-----ataaggtc 696  Q
    ||||||||||||||||||| ||||||||||| |||  ||||| |||||||||| ||||   | || |||||| || ||| ||| |||     ||||||||    
T  37130190 atcgaagttggacttgctgaaaatgctcgaaagcatgtgttttagttcgacaggcgaaaaagttaccgaaggacaatttggttgtggttcggataaggtc 37130289  T
Q  697 aagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatatagg 796  Q
    ||||||| ||||||| |||      |||  ||||||||||||||| |||||||| || | ||| |||||  |||||| |||||| |||||||||| ||||    
T  37130290 aagcaacggatattttcaag-----acacgttcgaaattcaaatcaaatggataagtatcgttagtttactgcagttatagttttaaattcaaatctagg 37130384  T
Q  797 tagttatttttattagtataaataatagtttctcgcaaggg-aaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaaga 895  Q
     |||||||| |||| ||||||||| |||||| || | |||| |||  |||| |||| |||||||||| |||||||||| ||||||||||||||  |||||    
T  37130385 cagttatttctatttgtataaatagtagtttttccctagggaaaaagggtcgcaattcaatcatacaaaaaacttacaatcaaattatccgcatggaaga 37130484  T
Q  896 gag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatca 950  Q
    ||| |||||||||| |||||| ||||||||||||| ||| |||||||||||||||||    
T  37130485 gagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatca 37130541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 605 - 928
Target Start/End: Complemental strand, 23870865 - 23870539
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacg-aatggtatcgaagggcagttttgttttgg-----ataaggtca 697  Q
    ||||||||||||||||||| ||||||||||| ||   ||||| |||||||| | || || | |||||||||||||||||||| |||     |||||||||    
T  23870865 atcgaagttggacttgctgaaaatgctcgaaagcgtgtgttttagttcgacgggcggaaagttatcgaagggcagttttgttgtggttcggataaggtca 23870766  T
Q  698 agcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggt 797  Q
    |||||||||||||||  |||    |||  |||||||||||||||||||| ||| || ||||| |||||  || ||| |||||| |||||||||| |||||    
T  23870765 agcaacagatatttc--aag----acactttcgaaattcaaatcgaatgaataagtattgttagtttactgccgttatagttttaaattcaaatctaggt 23870672  T
Q  798 agttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga 897  Q
    |||||||| |||| ||||||||| |||||| ||  ||   |||||||||||||| |||||||||| ||||||||||||||||||||  |||    |||||    
T  23870671 agttatttctatttgtataaatagtagtttttcctaaaaaaaagtggtcacaattcaatcatacaaaaaacttacactcaaattatttgcacgagagaga 23870572  T
Q  898 g-aacgagtcac-agttgctatgtatgaacatg 928  Q
    | |||||||||| |||||| |||||||||||||    
T  23870571 gaaacgagtcacaagttgcaatgtatgaacatg 23870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 730 - 955
Target Start/End: Complemental strand, 25349497 - 25349267
Alignment:
Q  730 gaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttct 829  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||||||||   ||| ||||||| || || |||||||||||||| |||||| |    
T  25349497 gaaattcaaatcgaacggatatatgttgttcgtttatagcagttgtagtttcaaatcttaatgtaggtagctacttctattagtataaatagtagttttt 25349398  T
Q  830 ---cgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaacgagtca-cagttgctatgtatgaa 924  Q
       |  | || |||  |||||||||| |||||||||||||||||||||||||| ||||||||   |||||| ||||||||||  |||||| ||||||| |    
T  25349397 tttcttagggaaaacgggtcacaatcaaatcatacacaaaacttacactcaaactatccgcattcaagagaggaacgagtcataagttgcaatgtatgga 25349298  T
Q  925 catgcgtaacaatttacattcaatcaatgca 955  Q
     ||| ||| ||||||||||||||||||||||    
T  25349297 tatgtgtaccaatttacattcaatcaatgca 25349267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 726 - 952
Target Start/End: Complemental strand, 28567942 - 28567715
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || | ||| |||||  |||||| |||||| |||||||||| |||| |||||||| |||| ||| ||||| ||||    
T  28567942 attcgaaattcaaatcgaatggataagtatcgttagtttactgcagttatagttttaaattcaaatctaggcagttatttctatttgtagaaatagtagt 28567843  T
Q  826 ttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagagaac-gagtcaca-gttgctatgtatga 923  Q
    ||  |   ||| |||  ||||||||| | |||||||| |||||||||||||||||||||||||  ||||||||||  |||||||| ||||| ||||||||    
T  28567842 tttccttcaggaaaaaaggtcacaattctatcataca-aaaacttacactcaaattatccgcatggaagagagaaatgagtcacaagttgcaatgtatga 28567744  T
Q  924 acatgcgtaacaatttacattcaatcaat 952  Q
    ||||| ||| |||||||||||||||||||    
T  28567743 acatgtgtaccaatttacattcaatcaat 28567715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 728 - 952
Target Start/End: Complemental strand, 23815215 - 23814987
Alignment:
Q  728 tcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagttt 827  Q
    ||||||||||||||||||||||| || | ||| |||||  |||||| |||||| |||||||||| |||| |||||||| |||| ||||||||| ||||||    
T  23815215 tcgaaattcaaatcgaatggataagtatagttagtttactgcagttatagttttaaattcaaatctaggcagttatttctatttgtataaatagtagttt 23815116  T
Q  828 ctcgcaagggaaagtgg-tcacaatccaatcatacacaaaa-cttacactcaaattatccgcaaagaagagagaa-cgagtcaca-gttgctatgtatga 923  Q
      |  |||| |||  || ||||||| | |||||||| |||| |||||||| ||||||||||||  |||||||||| ||||||||| ||||| ||||||||    
T  23815115 tccctaaggaaaaaagggtcacaattctatcatacaaaaaaacttacactaaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtatga 23815016  T
Q  924 acatgcgtaacaatttacattcaatcaat 952  Q
    ||||| ||| |||||||||||||||||||    
T  23815015 acatgtgtaccaatttacattcaatcaat 23814987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 687 - 928
Target Start/End: Original strand, 22708049 - 22708286
Alignment:
Q  687 ggataaggtcaagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaatt 786  Q
    ||||||||||||||||||||||||||  |||    ||| ||||||||||||||||||||||||| || || ||  ||||  |||||| |||||| |||||    
T  22708049 ggataaggtcaagcaacagatatttc--aag----acacattcgaaattcaaatcgaatggataagtattattaatttactgcagttatagttttaaatt 22708142  T
Q  787 caaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    ||||| ||||||||||||| ||||  |||||||| |||||| ||   ||| |||||||||||||| |||| ||||| |||||||||||| ||||||||||    
T  22708143 caaatctaggtagttatttctatttctataaatagtagtttttcctcaggaaaagtggtcacaattcaattatacaaaaaacttacacttaaattatccg 22708242  T
Q  887 caaagaagagag-aacgagtcac-agttgctatgtatgaacatg 928  Q
    ||   ||||||| ||||| |||| | |||| |||||||||||||    
T  22708243 catgcaagagagaaacgaatcacaaattgcaatgtatgaacatg 22708286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 788 - 955
Target Start/End: Original strand, 22593716 - 22593885
Alignment:
Q  788 aaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgc 887  Q
    |||| ||||||||||||| |||| ||||||||| |||||| |   ||||||||  ||||||||| |||||||||| |||||||||||||||||||| |||    
T  22593716 aaatctaggtagttatttatatttgtataaatagtagttttttctaagggaaaagggtcacaattcaatcatacaaaaaacttacactcaaattatgcgc 22593815  T
Q  888 aaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |  |||||||| |||||||||| |||||| ||||||||||||| ||| ||||||| ||||||||||||||    
T  22593816 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttatattcaatcaatgca 22593885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 760 - 955
Target Start/End: Complemental strand, 21905160 - 21904964
Alignment:
Q  760 cgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcat 859  Q
    ||||| ||||||||||||||||||||   ||| |||||||||||| || | ||||||||||||||||| ||  | || |||  |||||||| ||||||||    
T  21905160 cgtttctagcagttgtagtttcaaatcttaatgtaggtagttattcttct-agtataaataatagtttttcatagggaaaacaggtcacaaaccaatcat 21905062  T
Q  860 acacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||| |||||||||||||||| ||||| ||   ||||||| ||||||||||| ||| | ||||||||||||| ||| ||||||||||||||||||||||    
T  21905061 acaaaaaacttacactcaaactatccacattcaagagaggaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaatgca 21904964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 726 - 952
Target Start/End: Complemental strand, 23803589 - 23803357
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    |||||||||||||||||| |||||| || | ||| |||||  |||||| |||||| |||||||||| ||||||||||||| |||| ||||||||| ||||    
T  23803589 attcgaaattcaaatcgagtggataagtatagttagtttactgcagttatagttttaaattcaaatctaggtagttatttctatttgtataaatagtagt 23803490  T
Q  826 tt---ctcgcaagggaaagtggtcacaatccaatcatac-acaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgt 919  Q
    ||   ||   ||   |||  ||||||||| | ||||||| | ||||||| |||||||||||||||||  |||||||| ||||||| || |||||| ||||    
T  23803489 ttttcctataaataaaaaagggtcacaattctatcatacaaaaaaacttgcactcaaattatccgcatggaagagagaaacgagtaacaagttgcaatgt 23803390  T
Q  920 atgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||||||||| ||| |||||||||||||||||||    
T  23803389 atgaacatgtgtaccaatttacattcaatcaat 23803357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 854 - 955
Target Start/End: Complemental strand, 23769478 - 23769375
Alignment:
Q  854 aatcatacacaaaacttacactcaaattatccgcaaagaagagagaa-cgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaa 951  Q
    |||||||||||||| ||||||||||||||||||||   ||||||||| ||||||||| ||| | ||||||||||||| ||| ||||||||||||||||||    
T  23769478 aatcatacacaaaatttacactcaaattatccgcattcaagagagaaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaa 23769379  T
Q  952 tgca 955  Q
    ||||    
T  23769378 tgca 23769375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 877 - 952
Target Start/End: Complemental strand, 23829912 - 23829835
Alignment:
Q  877 aaattatccgcaaagaagagagaa-cgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||||||||||||  |||||||||| ||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||    
T  23829912 aaattatccgcatggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 23829835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 844 - 948
Target Start/End: Original strand, 20524168 - 20524274
Alignment:
Q  844 gtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagag-agaacgagtcac-agttgctatgtatgaacatgcgtaacaatttac 941  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||   ||||| | |||||||||| |||||| |||||||||  |  ||| ||||||||    
T  20524168 gtcacaattcaatcatacagaaaacttacactcaaactatccgcatttaagagaaaaacgagtcacaagttgcaatgtatgaatttttgtaccaatttac 20524267  T
Q  942 attcaat 948  Q
    |||||||    
T  20524268 attcaat 20524274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 30052008 - 30051963
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||    
T  30052008 ggtcacaattcaatcatacagaaaacttacactcaaactatccgca 30051963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 30090023 - 30089978
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||    
T  30090023 ggtcacaattcaatcatacagaaaacttacactcaaactatccgca 30089978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 30126628 - 30126583
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||    
T  30126628 ggtcacaattcaatcatacagaaaacttacactcaaactatccgca 30126583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 30143052 - 30143007
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||    
T  30143052 ggtcacaattcaatcatacagaaaacttacactcaaactatccgca 30143007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 10480845 - 10480787
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataa 563  Q
    |||||||| |||||||||||  ||||||||||||| | |||||| || |||||||||||||    
T  10480845 tgttagcctatatttttaag--gctatcttaaatgaaatcaaactaaggttgaccttataa 10480787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 501 - 573
Target Start/End: Complemental strand, 28568150 - 28568078
Alignment:
Q  501 actgttagccaatatttttaagaggctatc-ttaaatgcagtcaaaccaaagttgaccttataatcgaagaaat 573  Q
    ||||||||||||||||||||| ||| |||| || ||||||||||||   | ||||||||||| |||||||||||    
T  28568150 actgttagccaatatttttaaaaggttatcatttaatgcagtcaaa-ataggttgaccttatcatcgaagaaat 28568078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 120; Significance: 7e-61; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 605 - 955
Target Start/End: Complemental strand, 1750 - 1396
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcg-aagcacatgtttcagttcgacagacgaatggt-atcgaagggcagttttgttttgg-----ataaggtca 697  Q
    |||||||||||||||||||||||| |||| |||||| | |||||||||||||  ||||  || |||||| || |||||| || |||     |||||||||    
T  1750 atcgaagttggacttgctggaaatactcggaagcacgtctttcagttcgacaagcgaaaagttatcgaaaggaagtttttttatggttcagataaggtca 1651  T
Q  698 agcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggt 797  Q
    ||||||| ||||||||||      ||| ||||||||||||||||||||||||| |  | ||| |||||  ||| || |||||| |||||||||| |||||    
T  1650 agcaacaaatatttccaag-----acacattcgaaattcaaatcgaatggatatgcatcgttagtttactgcaattatagttttaaattcaaatctaggt 1556  T
Q  798 agttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga 897  Q
    |||||||| |||| ||||||||| |||||| ||  |||| |||  ||||||||  |||||||||| |||||||||||||||||||||||||  |||||||    
T  1555 agttatttctatttgtataaatagtagtttttcctaaggaaaaagggtcacaagtcaatcatacaaaaaacttacactcaaattatccgcatggaagaga 1456  T
Q  898 g-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    | |||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  1455 gaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 1396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 628 - 952
Target Start/End: Complemental strand, 250399 - 250076
Alignment:
Q  628 tgctcgaagcacatgtttcagttcgacagacgaatgg-tatcgaagggcagttttgtttt-ggataaggtcaagcaacagatatttccaaaggcgcacat 725  Q
    |||| ||||||| |||||||||||||  ||| ||  | |||||||||||| ||||| ||| |||||||||||| |||  ||||||||||| ||||||       
T  250399 tgctggaagcacgtgtttcagttcgaaggacaaaaagctatcgaagggcaattttgatttcggataaggtcaaacaatggatatttccaa-ggcgca--- 250304  T
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
     |||||||||||||||||||||||| |  ||||| |||||  |||||| ||| ||  ||||| ||| |||||||||||||| ||| ||||||||| ||||    
T  250303 -ttcgaaattcaaatcgaatggataagacttgttagtttactgcagttataggtttgaattcgaatctaggtagttattttgatttgtataaatagtagt 250205  T
Q  826 ttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatga 923  Q
    || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |  |||| ||| |||||||||| |||||| ||||||||    
T  250204 ttttcccaaggaaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccatatggaagcgagaaacgagtcacaagttgcaatgtatga 250105  T
Q  924 acatgcgtaacaatttacattcaatcaat 952  Q
    |  || ||| |||||||||||||||||||    
T  250104 atttgtgtaccaatttacattcaatcaat 250076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 591
Target Start/End: Complemental strand, 250505 - 250417
Alignment:
Q  503 tgttagccaatatttttaagaggctatct-taaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttatt 591  Q
    |||||||| |||||||| | ||||||||  ||||||||||||||  || ||||||||| | ||||||| ||||| ||||||| |||||||    
T  250505 tgttagcctatattttttaaaggctatcaataaatgcagtcaaaataa-gttgaccttgtgatcgaaggaataaggaatgctctcttatt 250417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 2e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 605 - 955
Target Start/End: Complemental strand, 40343191 - 40342844
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaag-cacatgtttcagttcgacagacgaat--ggtatcgaagggcagttttgttttggataaggtcaagca 701  Q
    ||||||||||||||||||| |||||||||||  | | ||||| |||||||| |  |||   | ||||||||||||| |||   | |||||||||||||||    
T  40343191 atcgaagttggacttgctgaaaatgctcgaaaacgcgtgttttagttcgacgggtgaaaaagttatcgaagggcaggttt---tcggataaggtcaagca 40343095  T
Q  702 acagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagtt 801  Q
    || ||||||| |||      ||| ||||||||||||||||||||| ||| || ||||| |||||   ||||| ||||||  ||||||||| |||||||||    
T  40343094 accgatattttcaag-----acacattcgaaattcaaatcgaatgaataagtattgttagtttactacagttatagttttgaattcaaatctaggtagtt 40343000  T
Q  802 atttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aa 900  Q
    |||| |||| ||||||||| ||||||  |  || | |||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||    
T  40342999 atttctatttgtataaatagtagttttccttaatgaaaagtggtcacaattcaatcatacaaaaaacttacactcaaattatccgcatggaagagagaaa 40342900  T
Q  901 cgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||| |||||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  40342899 cgagtcacaagttgcaatgtatgaacatgtgtaccaatttacatttaatcaatgca 40342844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 726 - 955
Target Start/End: Complemental strand, 10828019 - 10827787
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||| ||||||||| || | ||| |||  | |||||| |||||| |||||||||| |||| |||||||| |||| ||||||||| ||||    
T  10828019 attcgaaattcaaattgaatggataagtttcgttagttact-gcagttatagttttaaattcaaatctaggcagttatttctatttgtataaatagtagt 10827921  T
Q  826 ttctcgcaagggaaagt--ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtat 921  Q
    ||  |  ||||||||    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| |||||| ||||||    
T  10827920 tttccctaagggaaaaaagggtcacagtccaatcatacacaaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtat 10827821  T
Q  922 gaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||  || ||| ||||| ||||||||||||||||    
T  10827820 gaatctgtgtaccaattcacattcaatcaatgca 10827787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 726 - 955
Target Start/End: Complemental strand, 11021811 - 11021579
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||| ||||||||| || | ||| |||  | |||||| |||||| |||||||||| |||| |||||||| |||| ||||||||| ||||    
T  11021811 attcgaaattcaaattgaatggataagtttcgttagttact-gcagttatagttttaaattcaaatctaggcagttatttctatttgtataaatagtagt 11021713  T
Q  826 ttctcgcaagggaaagt--ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtat 921  Q
    ||  |  ||||||||    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| |||||| ||||||    
T  11021712 tttccctaagggaaaaaagggtcacagtccaatcatacacaaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtat 11021613  T
Q  922 gaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||  || ||| ||||| ||||||||||||||||    
T  11021612 gaatctgtgtaccaattcacattcaatcaatgca 11021579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 726 - 909
Target Start/End: Complemental strand, 24876589 - 24876404
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || | ||| ||||    ||||| || |||||||||||||| |||| || | | | |||| ||||||||| ||||    
T  24876589 attcgaaattcaaatcgaatggataagtatagttagttttctacagttataatttcaaattcaaatctaggaagctttatctatttgtataaatagtagt 24876490  T
Q  826 ttctcgcaagggaaagt--ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcaca 909  Q
    || || | ||| |||    ||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| |||||||||||    
T  24876489 tt-tccctaggaaaaaaagggtcacaattcaatcatacaaaaaacttacactcaaattatccgcatggaagagagaaacgagtcaca 24876404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 605 - 820
Target Start/End: Complemental strand, 13346944 - 13346726
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacgaat--ggtatcgaagggcagttttgttttgg-----ataaggtc 696  Q
    ||||||||||||||||||| ||||||||||| || | ||||| |||| ||| | | ||   | ||| |||||||||||||||| |||     |||| |||    
T  13346944 atcgaagttggacttgctgaaaatgctcgaaagcgcgtgttttagtttgacgggcaaaaaagttattgaagggcagttttgttgtggttcggataaagtc 13346845  T
Q  697 aagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatatagg 796  Q
    ||| |||| ||||||||||      ||| ||||||||||||||||||||||||| || ||||| ||||   |||||| |||||| |||||||||| |||     
T  13346844 aagtaacaaatatttccaag-----acacattcgaaattcaaatcgaatggataagtattgttagtttcctgcagttatagttttaaattcaaatctaga 13346750  T
Q  797 tagttatttttattagtataaata 820  Q
    ||||||||| |||| |||||||||    
T  13346749 tagttatttctatttgtataaata 13346726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 3665212 - 3665277
Alignment:
Q  64 tgcaatgacttccattgatggaccccccacatatccagcaccaatgcagcaaatcttctccatttt 129  Q
    |||||||||| |||||| |||||| || |||||||| ||||||||||||||||||||| |||||||    
T  3665212 tgcaatgactgccattgttggaccaccgacatatccggcaccaatgcagcaaatcttcaccatttt 3665277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 730 - 827
Target Start/End: Original strand, 10864085 - 10864181
Alignment:
Q  730 gaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagttt 827  Q
    ||||||||| ||||||||||| || ||||| | |||  |||||| |||||| |||||||||| |||  |||||||| |||| ||||||||| ||||||    
T  10864085 gaaattcaattcgaatggataagttttgttag-ttactgcagttatagttttaaattcaaatctagacagttatttctatttgtataaatagtagttt 10864181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 106; Significance: 2e-52; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 605 - 955
Target Start/End: Original strand, 12110 - 12465
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacgaat--ggtatcgaagggcagttttgttttgg-----ataaggtc 696  Q
    |||||||||||||||| || ||||||||||| || | ||||| |||||||  | ||||   | |||||||||||||||||||| |||     |||||| |    
T  12110 atcgaagttggacttgttgaaaatgctcgaaagcgcgtgttttagttcgatgggcgaaaaagttatcgaagggcagttttgttgtggttcggataaggac 12209  T
Q  697 aagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatatagg 796  Q
    |||||||  |||||| |||      ||| ||||||||||||||||||||||||| || ||||| |||||| |||||| |||||| |||||||||| ||||    
T  12210 aagcaacgaatattttcaag-----acacattcgaaattcaaatcgaatggataagtattgttagtttattgcagttatagttttaaattcaaatctagg 12304  T
Q  797 tagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagag 896  Q
    ||||||||| ||||  |||||||| |||||| ||   ||| |||| ||||||||  |||||||||| |||||||||||||||||||||||||  ||||||    
T  12305 tagttatttctatttatataaatagtagtttttccttaggaaaagaggtcacaaatcaatcatacaaaaaacttacactcaaattatccgcatggaagag 12404  T
Q  897 ag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    || ||| |||||| |||||| ||||||||||||| ||| |||||| ||||||| |||||||    
T  12405 agaaacaagtcacaagttgcaatgtatgaacatgtgtaccaatttgcattcaaccaatgca 12465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 605 - 955
Target Start/End: Complemental strand, 132788 - 132442
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacgaatggtatcgaagggcagttttgttttggataaggtcaagcaac 703  Q
    ||||||||||||||||||||| || |||||| || | ||| || |||||||| | | |   | |||||||||| ||||   ||||||||||||||| |||    
T  132788 atcgaagttggacttgctggagatactcgaaagcgcgtgtgtcggttcgacaaatggaaactctcgaagggcaatttt---ttggataaggtcaagtaac 132692  T
Q  704 agatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttat 803  Q
    ||||||||||||      ||| |||||||||||||||||||||||||  | ||||| |||||  |||||| ||| || |||||||||| |||||||||||    
T  132691 agatatttccaag-----acacattcgaaattcaaatcgaatggataaatattgttagtttactgcagttatagatttaaattcaaatttaggtagttat 132597  T
Q  804 ttttattagtataaataatagtttctcgcaagg-gaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aac 901  Q
    || ||||  |||||||| ||| || || | |||  |||  ||||||||| |||||||||| ||||||||||| ||||||||  |||  |||||||| |||    
T  132596 ttctatttatataaatagtagcttttccctaggaaaaaagggtcacaattcaatcatacaaaaaacttacacgcaaattatttgcatggaagagagaaac 132497  T
Q  902 gagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  132496 gagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 132442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 727 - 952
Target Start/End: Complemental strand, 43135804 - 43135576
Alignment:
Q  727 ttcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtt 826  Q
    |||||||||||||| ||||||||| || | ||| |||||  ||| || |||||| |||||||||| |||| |||||||| |||| ||||||||| |||||    
T  43135804 ttcgaaattcaaattgaatggataagtatagttagtttactgcaattatagttttaaattcaaatctaggcagttatttctatttgtataaatagtagtt 43135705  T
Q  827 tctcgcaagggaaagt--ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatg 922  Q
    | || | ||| |||    ||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| |||||||||| |||||  |||||||    
T  43135704 t-tccctaggaaaaaaaaggtcacaattcaatcatacaaaaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgtaatgtatg 43135606  T
Q  923 aacatgcgtaacaatttacattcaatcaat 952  Q
    |||||| ||| |||||||||||||||||||    
T  43135605 aacatgtgtaccaatttacattcaatcaat 43135576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 55002468 - 55002423
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||||| ||||||||||| |||| ||||||||    
T  55002468 ggtcacaattcaatcatacaaaaaacttacacgcaaactatccgca 55002423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 2e-46; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 688 - 952
Target Start/End: Original strand, 15337192 - 15337453
Alignment:
Q  688 gataaggtcaagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattc 787  Q
    |||||||||||||||||||||||| |||      ||| ||||||||||||||||||||||||| || | ||| |||||  |||||| |||||| ||||||    
T  15337192 gataaggtcaagcaacagatattttcaag-----acacattcgaaattcaaatcgaatggataagtatcgttagtttactgcagttatagttttaaattc 15337286  T
Q  788 aaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtgg-tcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    |||| |||| ||| |||| |||| ||||||||| |||||| || | |||||||   | ||||||| | |||||||| |||||||||||||||||||||||    
T  15337287 aaatctaggcagtaatttctatttgtataaatagtagttt-tccctagggaaaaaagatcacaattctatcatacaaaaaacttacactcaaattatccg 15337385  T
Q  887 caaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||  |||||||| |||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||    
T  15337386 catggaagagagcaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 15337453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 688 - 952
Target Start/End: Original strand, 15426257 - 15426518
Alignment:
Q  688 gataaggtcaagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattc 787  Q
    |||||||||||||||||||||||| |||      ||| ||||||||||||||||||||||||| || | ||| |||||  |||||| |||||| ||||||    
T  15426257 gataaggtcaagcaacagatattttcaag-----acacattcgaaattcaaatcgaatggataagtatcgttagtttactgcagttatagttttaaattc 15426351  T
Q  788 aaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtgg-tcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    |||| |||| ||| |||| |||| ||||||||| |||||| || | |||||||   | ||||||| | |||||||| |||||||||||||||||||||||    
T  15426352 aaatctaggcagtaatttctatttgtataaatagtagttt-tccctagggaaaaaagatcacaattctatcatacaaaaaacttacactcaaattatccg 15426450  T
Q  887 caaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||  |||||||| |||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||    
T  15426451 catggaagagagcaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 15426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 688 - 952
Target Start/End: Original strand, 15517561 - 15517822
Alignment:
Q  688 gataaggtcaagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattc 787  Q
    |||||||||||||||||||||||| |||      ||| ||||||||||||||||||||||||| || | ||| |||||  |||||| |||||| ||||||    
T  15517561 gataaggtcaagcaacagatattttcaag-----acacattcgaaattcaaatcgaatggataagtatcgttagtttactgcagttatagttttaaattc 15517655  T
Q  788 aaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtgg-tcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    |||| |||| ||| |||| |||| ||||||||| |||||| || | |||||||   | ||||||| | |||||||| |||||||||||||||||||||||    
T  15517656 aaatctaggcagtaatttctatttgtataaatagtagttt-tccctagggaaaaaagatcacaattctatcatacaaaaaacttacactcaaattatccg 15517754  T
Q  887 caaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||  |||||||| |||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||    
T  15517755 catggaagagagcaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 15517822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 665 - 955
Target Start/End: Original strand, 27818043 - 27818334
Alignment:
Q  665 tatcgaagggcagttttgttttggataaggtcaagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgttt 764  Q
    |||||||| ||||||  ||||||||||||| |||||||||||||  |||||| |   | || |||||||||||||||||| || ||  ||||||||| ||    
T  27818043 tatcgaagagcagttc-gttttggataaggacaagcaacagatacatccaaaagt--agatgttcgaaattcaaatcgaacggctatatgttgttcgctt 27818139  T
Q  765 atagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacaca 864  Q
     |||||||| |||||||||||     || ||||||||| || |||||||||||||| |||||| ||   |||||||| |||||||||||||| |||||||    
T  27818140 ttagcagttttagtttcaaatcttgctacaggtagttacttctattagtataaatagtagtttttccttagggaaaggggtcacaatccaatgatacaca 27818239  T
Q  865 aaacttacact--caaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||||||   ||| |||||  |   ||||||| |||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  27818240 aaacttacacttaaaaactatccatatgcaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 27818334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 760 - 955
Target Start/End: Original strand, 15911661 - 15911857
Alignment:
Q  760 cgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcat 859  Q
    ||||| |||||||| |||||||||||   ||| |||||||||||| || | |||||||||| |||||| ||  |||| |||  |||||||| ||||||||    
T  15911661 cgtttttagcagttatagtttcaaatcttaatgtaggtagttattcttct-agtataaatagtagtttttcataaggaaaataggtcacaaaccaatcat 15911759  T
Q  860 acacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||||||||||||||| ||||||||   ||||||| |||||||||| |||| | ||||||||||||| ||| ||||||||||||||||||||||    
T  15911760 acacaaaacttacactcaaactatccgcattcaagagagaaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaatgca 15911857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 726 - 952
Target Start/End: Complemental strand, 22698322 - 22698094
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    ||||||||||||||||||||||||| || | ||| |||||  |||||   ||||| |||||||||| ||||  ||||||| |||| ||||||||| ||||    
T  22698322 attcgaaattcaaatcgaatggataagtatagttagtttactgcagtaaaagtttaaaattcaaatctaggcggttatttctatttgtataaatagtagt 22698223  T
Q  826 ttctcgcaagggaaagtgg-tcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatg 922  Q
    || || | ||| |||  || ||||||| | |||||||| |||||||||||||||||||||||||  |||||||| |||||||||| |||||| |||||||    
T  22698222 tt-tccctaggaaaaaagggtcacaattctatcatacaaaaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtatg 22698124  T
Q  923 aacatgcgtaacaatttacattcaatcaat 952  Q
    |||||| ||| ||||||||| |||||||||    
T  22698123 aacatgtgtaccaatttacagtcaatcaat 22698094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 768 - 955
Target Start/End: Original strand, 18735327 - 18735514
Alignment:
Q  768 gcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaa 867  Q
    |||||| |||||| |||| ||||| |||| |||||||| |||| ||||||||| |||||||||  |||  |||  ||||||||| |||||||||| ||||    
T  18735327 gcagttatagttttaaat-caaatctaggcagttatttctatttgtataaatagtagtttctcttaagaaaaaagggtcacaattcaatcataca-aaaa 18735424  T
Q  868 cttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||||||||||||||||  ||||| || |||||||||| |||||| ||||||||| ||  ||| |||| |||||||||||||||||    
T  18735425 cttacactcaaattatccgcatggaagaaagaaacgagtcacaagttgcaatgtatgaatatctgtaccaatctacattcaatcaatgca 18735514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 15911406 - 15911472
Alignment:
Q  502 ctgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaa 568  Q
    ||||||||| | ||||||||  |||||||||||||||| |||||| | |||||||||||| ||||||    
T  15911406 ctgttagcctacatttttaaagggctatcttaaatgcaatcaaactagagttgaccttatgatcgaa 15911472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 810 - 888
Target Start/End: Complemental strand, 22698868 - 22698790
Alignment:
Q  810 tagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    |||||||||||| ||||||||  | |  |||  ||||||||| ||| |||||| |||||||||||||||||||||||||    
T  22698868 tagtataaataacagtttctcataggaaaaaagggtcacaattcaaccatacagaaaacttacactcaaattatccgca 22698790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 90; Significance: 6e-43; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 667 - 952
Target Start/End: Complemental strand, 14421 - 14139
Alignment:
Q  667 tcgaagggcagttttgtttt-ggataaggtcaag-caacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgttt 764  Q
    ||||||||||||||| |||| ||||||||||||  |||| ||||||| |||      ||| ||||||||||||||||||||||||| || ||||| |||     
T  14421 tcgaagggcagttttctttttggataaggtcaaaacaacggatattttcaag-----acacattcgaaattcaaatcgaatggataagttttgttagtta 14327  T
Q  765 atagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacaca 864  Q
     | |||||| |||||| |||||| ||| |||| |||||||| || | ||||||||| ||||||  |  |||| |||  ||||||||| |||||||||| |    
T  14326 ct-gcagttatagttttaaattcgaatctaggcagttatttctagttgtataaatagtagttttccctaaggaaaaagggtcacaattcaatcataca-a 14229  T
Q  865 aaacttacactcaaattatccgcaaagaagagagaa-cgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||    
T  14228 aaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 14139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 6e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 732 - 955
Target Start/End: Original strand, 10267142 - 10267365
Alignment:
Q  732 aattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcg 831  Q
    ||||||||||||||||||| || ||||| |||  | |||||| |||||| |||||| ||| |||| |||| |||||||| ||||||||| ||||||  |     
T  10267142 aattcaaatcgaatggataagttttgttagttact-gcagttatagttttaaattcgaatctaggcagttgtttttatttgtataaatagtagttttccc 10267240  T
Q  832 caagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagagaa-cgagtcaca-gttgctatgtatgaacatgc 929  Q
     |||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||  |||||||||| ||| ||||| ||||| |||||||||||||     
T  10267241 taaggaaaagtggtcaaaattcaatcataca-aaaacttacactcaaattatccgcatggaagagagaaacgaatcacaagttgcaatgtatgaacatgt 10267339  T
Q  930 gtaacaatttacattcaatcaatgca 955  Q
    ||| ||||||||||||||||||||||    
T  10267340 gtaccaatttacattcaatcaatgca 10267365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 760 - 955
Target Start/End: Complemental strand, 49526654 - 49526455
Alignment:
Q  760 cgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtgg-tcacaatccaatca 858  Q
    ||||||||||||||||||||||||||   ||| ||||||||| ||| ||||| |||||||| |||||| ||   |||||||  || | ||||||||||||    
T  49526654 cgtttatagcagttgtagtttcaaatcttaatgtaggtagttttttctattaatataaatagtagtttttccttagggaaaaagggtgacaatccaatca 49526555  T
Q  859 tacacaaaacttacactcaaattatccgca-aagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||||||||||| ||||| ||||||||    ||||||| |||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  49526554 tacacaaaacttacaatcaaactatccgcattcaaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatgca 49526455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 733 - 952
Target Start/End: Original strand, 1658509 - 1658726
Alignment:
Q  733 attcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgc 832  Q
    |||||||||||||||||| || | ||| |||||  |||||| |||||| |||||||||| |||| ||||||||||    ||||||| | ||||||  |      
T  1658509 attcaaatcgaatggataagtttcgttagtttactgcagttatagttttaaattcaaatctaggcagttattttt----gtataaacagtagttttcctt 1658604  T
Q  833 aagggaaagtg-gtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgc 929  Q
    | || |||  | |||||||| | |||||||| |||||||||||||||||||||||||  |||||||| |||||||||| |||||| ||||||||| |||     
T  1658605 agggaaaaaagtgtcacaattctatcataca-aaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgcaatgtatgaatatgt 1658703  T
Q  930 gtaacaatttacattcaatcaat 952  Q
    ||| ||| |||||||||||||||    
T  1658704 gtaccaacttacattcaatcaat 1658726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 667 - 952
Target Start/End: Complemental strand, 18567281 - 18567001
Alignment:
Q  667 tcgaagggcagttttgttttggataaggtcaag-caacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgttta 765  Q
    ||||||||||||||  ||||||||||||||||  |||| ||||||| ||| | ||||    |||||||||||||| ||||||||| || | ||| |||      
T  18567281 tcgaagggcagtttctttttggataaggtcaaaacaacggatattttcaa-gacgca----ttcgaaattcaaattgaatggataagtttcgttagttac 18567187  T
Q  766 tagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaa 865  Q
    | ||| || | |||| |||||||||| |||| | |||||| |||| ||||||||| |||||| || | ||  |||  ||||||||| | |||||||| ||    
T  18567186 t-gcaattattgttttaaattcaaatctaggcaattatttctatttgtataaatagtagttt-tccctagaaaaaaaggtcacaattctatcataca-aa 18567090  T
Q  866 aacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    ||||||||||||||||| |||||  |||||||| |||||||||| |||||| ||| ||||| ||| ||| |||||||||||||| ||||    
T  18567089 aacttacactcaaattacccgcatggaagagagaaacgagtcacaagttgcaatgaatgaatatgtgtaccaatttacattcaaacaat 18567001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 793 - 955
Target Start/End: Complemental strand, 31079919 - 31079753
Alignment:
Q  793 taggtagttatttttattagtataaataatagtttctcgcaagggaaa--gtggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaa 890  Q
    |||| |||||||| |||| ||||||||| |||||||   ||| |||||  | ||||||||| |||||||||| |||||||||||||||||||||||||      
T  31079919 taggcagttatttctatttgtataaatagtagtttcctccaaaggaaaaaggggtcacaattcaatcatacaaaaaacttacactcaaattatccgcatg 31079820  T
Q  891 gaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||| |||||||||| | |||| |||| |||||||| ||| |||| || |||| |||||||||    
T  31079819 gaagagagaaacgagtcacaaattgcaatgtgtgaacatgtgtaccaatctatattcgatcaatgca 31079753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 809 - 888
Target Start/End: Complemental strand, 27812468 - 27812389
Alignment:
Q  809 ttagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||||||||||||| || || |  |||  ||||||||| |||||||||| |||||||||||||||||||||||||    
T  27812468 ttagtataaataatagtttttcacatgaaaaacgggtcacaattcaatcatacagaaaacttacactcaaattatccgca 27812389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 843 - 955
Target Start/End: Original strand, 50687566 - 50687680
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagaga-gaacgagtcac-agttgctatgtatgaacatgcgtaacaattta 940  Q
    |||||||| ||||||||||||||||||||||||||   ||||||||   ||||||  |||||||||| ||||   ||||||||||||| ||| |||||||    
T  50687566 ggtcacaaaccaatcatacacaaaacttacactcaggctatccgcattcaagagacaaacgagtcacaagttataatgtatgaacatgtgtaccaattta 50687665  T
Q  941 cattcaatcaatgca 955  Q
    |||||||| ||||||    
T  50687666 cattcaataaatgca 50687680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 50687230 - 50687285
Alignment:
Q  503 tgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgacct 558  Q
    ||||| || ||||||||||  || ||||||||||||||||||||||||||||||||    
T  50687230 tgttaacctatatttttaaagggttatcttaaatgcagtcaaaccaaagttgacct 50687285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 49526919 - 49526857
Alignment:
Q  499 taactgttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataa 563  Q
    |||||||||||| |||||||||||  ||||||||||||| |||||||| ||  ||||||||||||    
T  49526919 taactgttagcctatatttttaag--gctatcttaaatgtagtcaaactaagattgaccttataa 49526857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 605 - 952
Target Start/End: Original strand, 7206 - 7560
Alignment:
Q  605 atcgaagttggacttgctggaaatgctcgaa-gcacatgtttcagttcgacagacg-aatggtatcgaagggcagttttgttttgg------ataaggtc 696  Q
    ||||||||||||||||||||| || |||||| ||   ||||| |||||||||| || || | ||||||||| |||||||||| |||      ||||||||    
T  7206 atcgaagttggacttgctggagatactcgaaagcgtgtgttttagttcgacaggcggaaagttatcgaaggacagttttgttgtggttttagataaggtc 7305  T
Q  697 aagcaacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatatagg 796  Q
    |||||||| ||||||   |||    ||| ||||||||||||||||||||||||| || | ||| |||||    |||| |||||| |||||||||| ||||    
T  7306 aagcaacatatatttttcaag----acacattcgaaattcaaatcgaatggataagtatcgttagtttactatagttatagttttaaattcaaatctagg 7401  T
Q  797 tagttatttttattagtataaataatagtttctcgcaagggaaagtgg--tcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaag 894  Q
     |||||||| |||| ||||||||||||| | ||| | |||||||   |  ||||||| |||||||||| ||||| |||||||||||||||||||  ||||    
T  7402 cagttatttctatttgtataaataatagct-ctccctagggaaaaaagagtcacaattcaatcatacaaaaaacatacactcaaattatccgcatggaag 7500  T
Q  895 agag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaat 952  Q
    |||| |||||||||| |||||| ||||||||||||| ||| ||| |||||||||||||||    
T  7501 agagaaacgagtcacaagttgcaatgtatgaacatgtgtatcaacttacattcaatcaat 7560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 726 - 952
Target Start/End: Original strand, 3605 - 3832
Alignment:
Q  726 attcgaaattcaaatcgaatggataggtgttgttcgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagt 825  Q
    |||||||||||||||| |||||||| |||| ||| |||||  |||||| ||||||  ||||||||| |||| |||||||| |||| |||||| || ||||    
T  3605 attcgaaattcaaatcaaatggataagtgtcgttagtttactgcagttatagtttttaattcaaatctaggcagttatttctatttgtataagtagtagt 3704  T
Q  826 ttctcgcaagggaaagt-ggtcacaatccaatcatacacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatg 922  Q
    || || | ||||||| | ||||||||| | |||||||| |||||||||||||||||||||||||  |||||||| |||||||||| |||||  |||||||    
T  3705 tt-tccctagggaaaatgggtcacaattctatcatacaaaaaacttacactcaaattatccgcatggaagagagaaacgagtcacaagttgaaatgtatg 3803  T
Q  923 aacatgcgtaacaatttacattcaatcaat 952  Q
    |||||| | | ||||||| |||||||||||    
T  3804 aacatgtg-accaatttatattcaatcaat 3832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 760 - 955
Target Start/End: Complemental strand, 8969 - 8772
Alignment:
Q  760 cgtttatagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcat 859  Q
    ||||| |||||| |||||||||||||   ||| ||||||||||||| |  ||||||||||| ||||||  |  |||| |||  |||||||||||||||||    
T  8969 cgtttctagcagctgtagtttcaaatcttaatgtaggtagttatttcttctagtataaatagtagttttccataaggaaaacgggtcacaatccaatcat 8870  T
Q  860 acacaaaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    |||||||||||||||||||| ||||| ||   ||||||| |||||||||| |||| | ||||||||||||| ||| ||||||||||||||||||||||    
T  8869 acacaaaacttacactcaaactatccacattcaagagagaaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaatgca 8772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 787 - 955
Target Start/End: Complemental strand, 102165 - 101996
Alignment:
Q  787 caaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    ||||| |||| |||||||| |||| |||||||||||||||||||  |||| |||  ||||||||| |||||||||| |||||||||||||||||||||||    
T  102165 caaatctaggcagttatttctatttgtataaataatagtttctcttaaggaaaaagggtcacaattcaatcataca-aaaacttacactcaaattatccg 102067  T
Q  887 caaagaagagag-aacgagtc-acagttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||  |||||||| |||||||| | |||||| ||||||||| ||| ||| |||| |||||||||||||||||    
T  102066 catggaagagagaaacgagtcaaaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgca 101996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 787 - 955
Target Start/End: Complemental strand, 3861 - 3692
Alignment:
Q  787 caaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    ||||| |||| |||||||| |||| ||||||||| |||||||||  |||  |||  ||||||||| |||||||||| |||||||||||||||||||||||    
T  3861 caaatctaggcagttatttctatttgtataaatattagtttctcttaagtaaaaagggtcacaattcaatcataca-aaaacttacactcaaattatccg 3763  T
Q  887 caaagaagagag-aacgagtc-acagttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||  |||||||| |||||||| | |||||| ||||||||| ||| ||| |||| |||||||||||||||||    
T  3762 catggaagagagaaacgagtcaaaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgca 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 787 - 955
Target Start/End: Original strand, 8955 - 9124
Alignment:
Q  787 caaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatccg 886  Q
    ||||| |||| |||||||| |||| ||||||||| |||||||||  |||| |||   |||||||| |||||||||| |||||||||| ||||||||||||    
T  8955 caaatctaggcagttatttctatttgtataaatagtagtttctcttaaggaaaaagagtcacaattcaatcataca-aaaacttacattcaaattatccg 9053  T
Q  887 caaagaagagagaa-cgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||  |||||||||| | ||||||| ||||| ||||||||| ||| ||| |||| |||||||||||||||||    
T  9054 catggaagagagaaacaagtcacaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgca 9124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 667 - 944
Target Start/End: Original strand, 36180 - 36454
Alignment:
Q  667 tcgaagggcagttttgttttggataaggtcaag-caacagatatttccaaaggcgcacatattcgaaattcaaatcgaatggataggtgttgttcgttta 765  Q
    ||||||||||||||| ||||||||||||||||  |||| |||| || |||      ||||||||||||||||||||||||||||| || | ||| | |||    
T  36180 tcgaagggcagttttcttttggataaggtcaaaacaacggataatttcaag-----acatattcgaaattcaaatcgaatggataagtttcgttag-tta 36273  T
Q  766 tagcagttgtagtttcaaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtc-acaatccaatcatacaca 864  Q
      |||||| |||||| |||||||||| |||| |||||||  |||| | ||||||| |||||| ||||  ||||||  || | |||||||||| ||||| |    
T  36274 ctgcagttatagttttaaattcaaatctaggcagttattaatatttgcataaatagtagttt-tcgctggggaaaaagggctacaatccaataatacaaa 36372  T
Q  865 aaacttacactcaaattatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacatt 944  Q
    | |||| ||||| |||||| ||||  |||||||| |||||||||| |||||| ||||||||||||| ||| ||| |||||||    
T  36373 atactttcactctaattattcgcatggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaacttacatt 36454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 782 - 955
Target Start/End: Original strand, 70604 - 70779
Alignment:
Q  782 aaattcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtgg-tcacaatccaatcatacacaaaacttacactcaaat 880  Q
    |||||| ||| |||| |||||||| |||| ||||||||| |||||| ||   |||||||  || ||||||| |||||||||| || ||||||||||||||    
T  70604 aaattcgaatctaggcagttatttctatttgtataaatagtagttt-tccatagggaaaacggatcacaattcaatcatacaaaatacttacactcaaat 70702  T
Q  881 tatccgcaaagaagagag-aacgagtcac-agttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||||  |||||||| |||||||||| |||||| |||||||||||||  || ||||||||||||| ||||||||    
T  70703 tatccgcatggaagagagaaacgagtcacaagttgcaatgtatgaacatgtttaccaatttacattcagtcaatgca 70779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 923
Target Start/End: Original strand, 7399 - 7536
Alignment:
Q  786 tcaaatataggtagttatttttattagtataaataatagtttctcgcaagggaaagtggtcacaatccaatcatacacaaaacttacactcaaattatcc 885  Q
    |||||| |||| |||||||| |||| ||||||||| | ||| |||  |||| | |  |||| |||| ||||||||||  |||||||||||||||||||||    
T  7399 tcaaatctaggcagttatttctatttgtataaatagttgttcctcttaaggaataagggtcgcaattcaatcataca--aaacttacactcaaattatcc 7496  T
Q  886 gcaaagaagaga-gaacgagtcaca-gttgctatgtatga 923  Q
    |||  |||||||  ||||||||||| ||||| ||||||||    
T  7497 gcatggaagagataaacgagtcacatgttgcaatgtatga 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1898 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1898
Description:

Target: scaffold1898; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 505 - 568
Target Start/End: Original strand, 1026 - 1089
Alignment:
Q  505 ttagccaatatttttaagaggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaa 568  Q
    |||||| ||||||||||  |||||||||| |||||||||||||  |||||||||||| ||||||    
T  1026 ttagcctatatttttaaacggctatcttacatgcagtcaaaccgtagttgaccttatgatcgaa 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 25857 - 25812
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||||    
T  25857 ggtcacaattcaatcatacagaaaacttacacttaaattatccgca 25812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 843 - 885
Target Start/End: Original strand, 200148 - 200189
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatcc 885  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  200148 ggtcacaattcaatcataca-aaaacttacactcaaattatcc 200189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 728 - 683
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| || ||||||| |||||||||||||||| ||||||||    
T  728 ggtcacaattcagtcatacaaaaaacttacactcaaactatccgca 683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 888
Target Start/End: Original strand, 5572 - 5617
Alignment:
Q  843 ggtcacaatccaatcatacacaaaacttacactcaaattatccgca 888  Q
    ||||||||| |||||||| | |||||||||||||||| ||||||||    
T  5572 ggtcacaattcaatcatatagaaaacttacactcaaactatccgca 5617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 899 - 955
Target Start/End: Complemental strand, 17041 - 16984
Alignment:
Q  899 aacgagtcaca-gttgctatgtatgaacatgcgtaacaatttacattcaatcaatgca 955  Q
    ||||||||||| ||||| ||||||||||||| | | ||| ||||||||||||||||||    
T  17041 aacgagtcacaagttgcaatgtatgaacatgtgcaccaacttacattcaatcaatgca 16984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University