View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-20 (Length: 339)
Name: NF4630-Insertion-20
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-20 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 42795659 - 42795991
Alignment:
| Q |
8 |
ttctctaacaatttccattcttgtttgagtgtgttgtttcataagggtaatccaaatggcgaaggatgttgaagttgctgaacgtggctctttctctaac |
107 |
Q |
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| T |
42795659 |
ttctctaacaacttccattcttgtttgagtgtgttgtttcataagggtaatccaaatggcaaaggatgttgaagttgctgaacgtggctctttctctaac |
42795758 |
T |
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| Q |
108 |
aaagactaccatgatcctccaccagcaccactcattgatgctgaagaacttacaaaatggtccttttatagggctcttattgctgagttcattgcaactt |
207 |
Q |
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| T |
42795759 |
aaagactaccatgaccctccaccagcaccactcattgatgctgaagaactcacaaaatggtccttttatagggctcttattgctgagttcattgcaactt |
42795858 |
T |
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| Q |
208 |
tacttttcctttacgttactgttttgactgtgattggttacagtattcaaactgatgttaaagctggtggtgatgcttgtggtggtgttggaattcttgg |
307 |
Q |
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| T |
42795859 |
tacttttcctttacgttactgttttgactgtgattggttacagtattcaaactgatgttaaagctggtggtgatgcttgtggtggtgttggaattcttgg |
42795958 |
T |
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| Q |
308 |
tattgcttgggcttttgg-tggcatgatctttg |
339 |
Q |
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| T |
42795959 |
tattgcttgggcttttggttggcatgatctttg |
42795991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 334
Target Start/End: Original strand, 21793036 - 21793262
Alignment:
| Q |
108 |
aaagactaccatgatcctccaccagcaccactcattgatgctgaagaacttacaaaatggtccttttatagggctcttattgctgagttcattgcaactt |
207 |
Q |
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| T |
21793036 |
aaagattaccaagacccacctccagcaccattgatagatgttgaggagctaacaaagtggtcattttatagagctcttatagctgagtttgttgcaacac |
21793135 |
T |
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| Q |
208 |
tacttttcctttacgttactgttttgactgtgattggttacagtattcaaactgatgttaaagctggtggtgatgcttgtggtggtgttggaattcttgg |
307 |
Q |
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| T |
21793136 |
ttctcttcctttatgtcactgttttgaccattattggttatagccaccagtctgatcctaaagctggtggtaccgactgtgatggtgttggaattttggg |
21793235 |
T |
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| Q |
308 |
tattgcttgggcttttggtggcatgat |
334 |
Q |
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| T |
21793236 |
tattgcttgggcttttggtggcatgat |
21793262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 35230908 - 35230878
Alignment:
| Q |
309 |
attgcttgggcttttggtggcatgatctttg |
339 |
Q |
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| T |
35230908 |
attgcttgggcttttggtggcatgatctttg |
35230878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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