View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-25 (Length: 277)
Name: NF4630-Insertion-25
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-25 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 14283545 - 14283280
Alignment:
| Q |
12 |
taactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccgataacctttcttcatggaaacaaatagaagcactttttcg |
111 |
Q |
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| T |
14283545 |
taactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttcg |
14283446 |
T |
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| Q |
112 |
gttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaatttattgg |
211 |
Q |
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| T |
14283445 |
gttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaatttattgg |
14283346 |
T |
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| Q |
212 |
gcagcaaacattgtgattgcttctttgttcactgcctcagctattgttcgaatgataaccgttggt |
277 |
Q |
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| T |
14283345 |
gcagcaaactttgtgattgcttctttgttcactgcttcagctattgttcgaatgataaccgttggt |
14283280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 14305307 - 14305045
Alignment:
| Q |
8 |
ttggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccgataacctttcttcatggaaacaaatagaagcacttt |
107 |
Q |
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| T |
14305307 |
ttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacttt |
14305208 |
T |
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| Q |
108 |
ttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaattta |
207 |
Q |
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| T |
14305207 |
ttcggttgtttcaagcaataaccaacatagttatagtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatcta |
14305108 |
T |
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| Q |
208 |
ttgggcagcaaacattgtgattgcttctttgttcactgcctcagctattgttcgaatgataac |
270 |
Q |
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| T |
14305107 |
ttggatagcaaactttgtgattgctactttgtttgctgtttcggctattgttcgattgataac |
14305045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 14321698 - 14321436
Alignment:
| Q |
8 |
ttggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccgataacctttcttcatggaaacaaatagaagcacttt |
107 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
14321698 |
ttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataaactttcttcatggaaacaaatagaagcacttt |
14321599 |
T |
|
| Q |
108 |
ttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaattta |
207 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||| |||||| |||||||||| |||| ||||| || |
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| T |
14321598 |
ttcggttgtttcaagcaataaccaacatagtgatagtgatactaatggtacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatcta |
14321499 |
T |
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| Q |
208 |
ttgggcagcaaacattgtgattgcttctttgttcactgcctcagctattgttcgaatgataac |
270 |
Q |
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|||| ||||||| |||| ||||| ||||||| |||| ||||||||||||||| ||||||| |
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| T |
14321498 |
ttggatagcaaactttgtaattgcaactttgtttgctgcttcagctattgttcgattgataac |
14321436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 25886380 - 25886148
Alignment:
| Q |
8 |
ttggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccgataacctttcttcatggaaacaaatagaagcacttt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
25886380 |
ttggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacctt |
25886281 |
T |
|
| Q |
108 |
ttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaattta |
207 |
Q |
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||||||||||||||||| || |||||| || || |||||||||||| ||||||||| |||||| ||| |||||| |||||||||| |||| ||||| || |
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| T |
25886280 |
ttcggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatcta |
25886181 |
T |
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| Q |
208 |
ttgggcagcaaacattgtgattgcttctttgtt |
240 |
Q |
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| T |
25886180 |
ttggatagcaaactttgtgattgcttctttgtt |
25886148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 44350224 - 44349992
Alignment:
| Q |
8 |
ttggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccgataacctttcttcatggaaacaaatagaagcacttt |
107 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
44350224 |
ttggtaactaccattttggctataacttaaactgttctaggaatattggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacctt |
44350125 |
T |
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| Q |
108 |
ttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaattta |
207 |
Q |
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|||||||||||||||| || ||||||||| ||||||||||||||| |||| ||| |||||| ||| |||||| |||||||||| | || ||||| || |
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| T |
44350124 |
ttcggttgtttcaagctgtagtcaacatagtaatagtgattctaatgttacacgaggaaaagttcaaatcttccaaacaccctttatccctaagaatcta |
44350025 |
T |
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| Q |
208 |
ttgggcagcaaacattgtgattgcttctttgtt |
240 |
Q |
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|||| || |||| ||||||||||||||||||| |
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| T |
44350024 |
ttggatagtaaactttgtgattgcttctttgtt |
44349992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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