View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4630-Insertion-3 (Length: 1040)
Name: NF4630-Insertion-3
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 906; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 6 - 1024
Target Start/End: Complemental strand, 31060441 - 31059417
Alignment:
| Q |
6 |
caaaaaggccccttatacagctgcacttgtgacgtctcctcttctctgttcatatctttgattatcaacatgtttattgaaaaaccatggccctcctatc |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060441 |
caaaaaggccccttatacagctgcacttgtgacgtctcctcttctctgttcatatcttcgattatcaacatgtttattgaaaaaccatggccctcctatc |
31060342 |
T |
|
| Q |
106 |
aaaactttttggacatcaagatggtgaaaaaattggaataggaacgttcacagatttgcttccttaattgacacaaactggagaacatatgcctgccttg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
31060341 |
aaaactttttggacatcaagatggtgaaaaaattggaataggaac-ttcagaaatttgcttccttaattgacacaaactggagaacttacgcctgccttg |
31060243 |
T |
|
| Q |
206 |
ttttccctcaacatatgcactctcccgggtctgtctgtgaggaaacgcccaaccaaa---catcgccgcatctacacaatt-gtaaccaacattttccgt |
301 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31060242 |
ttttccctcaacatatgcactctcccgtgtctgtctgtgaggaaacgcccaatcaaattacatcgccgcatctacacaatttgtaaccaacattttccgt |
31060143 |
T |
|
| Q |
302 |
gcttttctactcttttacagaaatcacaactccagggagccagttagccaagcatgtcgtgataaataaaggtaagaaactcttccccgtgtgatcaatt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31060142 |
gcttttctactcttttacagaaatcacaactccagggagccagttagccaagcatgtcgtgataaataaaggtaagaaactcttccccgtgtgatcaatt |
31060043 |
T |
|
| Q |
402 |
ttattcgctcaatatttagacatgatttctaaattaaattcgttcattgatttcttctccattgatttaattttctacacctaattaaattatgaattta |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
31060042 |
ttattcgctcaatatttagacatgatttctaaattaaattcgttcattgatttcttctccattggtttaattttctacacctaattaaatgatgaattta |
31059943 |
T |
|
| Q |
502 |
ttaaaagcacttttgcatttaaaggatgagtttatcaccgttactactgctgttgaacctttactactgttgttcatgagtgaatctgtttttcatgttc |
601 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31059942 |
ttaaaagcacttttgcatttaaaggatgaatttatcaccattactactgctgttgaacctttactactgttgttcatgaatgaatctgtttttcatgttc |
31059843 |
T |
|
| Q |
602 |
attttgaggtagtaattggtgcaatagaaagggagaaagaaatcggtgcaaatttgttcatttgtacaatctttccatatggaattttcaaagtcaaact |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31059842 |
attttgaggtagtaattggtgcaatagaaagggagaaagaaatcggtgcaaatttgttcatttgtacaatctttccatatgaaattttcaaagtcaaact |
31059743 |
T |
|
| Q |
702 |
c---ttaccacaaagcttacaactgaagaaacaacaaaagacgaggatgttagtatcattattatctatgtacagtagactatttcatagtgaagttgtc |
798 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31059742 |
cttattaccacaaagcttacaactgaagaaacaacaaaagacaaggatcttagtatcattattatctatgtacagtagactatttcatagtgaagttgtt |
31059643 |
T |
|
| Q |
799 |
ctagtcttatcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtgaacgtggattttg |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31059642 |
ctagtcttatcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtaaacgtggattttg |
31059543 |
T |
|
| Q |
899 |
actcaagcaagcagatgctaaccttgcaatcaagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaacatctgttaacaac |
998 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31059542 |
actcaagcaagcaaatgccaaccttgcaatcaagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaacatctgttaacaac |
31059443 |
T |
|
| Q |
999 |
atattgttagccatcggtctcgtaga |
1024 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31059442 |
atattgttagccatcggtctcgtaga |
31059417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 786 - 1012
Target Start/End: Complemental strand, 31141655 - 31141429
Alignment:
| Q |
786 |
tagtgaagttgtcctagtcttatcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtg |
885 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||||||| | |
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|
| T |
31141655 |
tagttaagttgccctagtctgatcatgtgaagttgcattcccaccaaaggtgattttcctattgcaagcattttagatacttgatccatggttggtcgag |
31141556 |
T |
|
| Q |
886 |
aacgtggattttgactcaagcaagcagatgctaaccttgcaatcaagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaac |
985 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
31141555 |
aacgtggattttgattcaagcaagcaaatgccaaccttgcaatcaagataacctcctcatcaactggtttcataacatgttgaggtctttgatctaaaac |
31141456 |
T |
|
| Q |
986 |
atctgttaacaacatattgttagccat |
1012 |
Q |
| |
|
|||| | ||||||||||| |||||||| |
|
|
| T |
31141455 |
atctatcaacaacatattattagccat |
31141429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 786 - 1012
Target Start/End: Complemental strand, 31160473 - 31160247
Alignment:
| Q |
786 |
tagtgaagttgtcctagtcttatcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtg |
885 |
Q |
| |
|
|||| |||||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||||||| | |
|
|
| T |
31160473 |
tagttaagttgcccaagtctgatcatgtgaatttgcattcccaccaaaggtgattttcctattgcaagcattttagatacttgatccatggttggtcgag |
31160374 |
T |
|
| Q |
886 |
aacgtggattttgactcaagcaagcagatgctaaccttgcaatcaagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaac |
985 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
31160373 |
aacgtggattttgattcaagcaagcaaatgccaaccttgcaatcaagataacctcctcatcaactggtttcataacatgttgaggtctttgatctaaaac |
31160274 |
T |
|
| Q |
986 |
atctgttaacaacatattgttagccat |
1012 |
Q |
| |
|
|||| | ||||||||||| |||||||| |
|
|
| T |
31160273 |
atctatcaacaacatattattagccat |
31160247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 786 - 1012
Target Start/End: Complemental strand, 31242576 - 31242350
Alignment:
| Q |
786 |
tagtgaagttgtcctagtcttatcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtg |
885 |
Q |
| |
|
|||| |||||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||||||| | |
|
|
| T |
31242576 |
tagttaagttgcccaagtctgatcatgtgaatttgcattcccaccaaaggtgattttcctattgcaagcattttagatacttgatccatggttggtcgag |
31242477 |
T |
|
| Q |
886 |
aacgtggattttgactcaagcaagcagatgctaaccttgcaatcaagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaac |
985 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
31242476 |
aacgtggattttgattcaagcaagcaaatgccaaccttgcaatcaagataacctcctcatcaactggtttcataacatgttgaggtctttgatctaaaac |
31242377 |
T |
|
| Q |
986 |
atctgttaacaacatattgttagccat |
1012 |
Q |
| |
|
|||| | ||||||||||| |||||||| |
|
|
| T |
31242376 |
atctatcaacaacatattattagccat |
31242350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 829 - 1024
Target Start/End: Complemental strand, 31104176 - 31103981
Alignment:
| Q |
829 |
ccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtgaacgtggattttgactcaagcaagcagatgctaaccttgcaat |
928 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||| |||| |||| || ||||||||| |||| | ||||||| | |||| ||| ||||||| |
|
|
| T |
31104176 |
ccaaaggtgattttcctgctccaagcatcttacatacttgatccatagttggacgagaacgtggaacttgatttaagcaagaaaatgccaactttgcaat |
31104077 |
T |
|
| Q |
929 |
caagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaacatctgttaacaacatattgttagccatcggtctcgtaga |
1024 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||| || ||||||| |||||| | ||||| ||||| |
|
|
| T |
31104076 |
caagataacctcctcatcaattggttttataactttttgaggtctttgatctaaaacctctgtcaataacatatcattagccgttggtcttgtaga |
31103981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 829 - 987
Target Start/End: Complemental strand, 31185157 - 31184999
Alignment:
| Q |
829 |
ccaaaggtgattttcctattgcaagcatcttacaaacttgacccatgcttggtcgtgaacgtggattttgactcaagcaagcagatgctaaccttgcaat |
928 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||| ||||| |||| || || ||||| | | || | | ||||| | |||||||| ||||||| |
|
|
| T |
31185157 |
ccaaaggtgattttcctgctccaagcatcttacatacttgatccatggttggccgagagcgtggctctggatttatgcaagaaaatgctaactttgcaat |
31185058 |
T |
|
| Q |
929 |
caagataacctcctcatcaattggttccattacttgttgaggtctttgatctaaaacat |
987 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
31185057 |
caagataacctcctcatcaattggtttcataacttcttgaggtctttgatctaaaacat |
31184999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 808 - 863
Target Start/End: Complemental strand, 31104337 - 31104282
Alignment:
| Q |
808 |
tcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaa |
863 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
31104337 |
tcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcatcttacaa |
31104282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 477
Target Start/End: Complemental strand, 31142580 - 31142473
Alignment:
| Q |
370 |
aaggtaagaaactcttccccgtgtgatcaattttattcgctcaatatttagacatgatttctaaa-ttaaattcgttcattgatttcttctccattgatt |
468 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||||| | |||||| ||| ||| |||| ||||||| |||||| || | |||||||||| | |
|
|
| T |
31142580 |
aaggttagaaactcttcgctgtgtgatcaattttattcgctcattctttagatatgttttgtaaatttaaatttcttcattaatat-ttctccattgcta |
31142482 |
T |
|
| Q |
469 |
taattttct |
477 |
Q |
| |
|
||||||||| |
|
|
| T |
31142481 |
taattttct |
31142473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 639
Target Start/End: Original strand, 47600743 - 47600805
Alignment:
| Q |
577 |
atgagtgaatctgtttttcatgttcattttgaggtagtaattggtgcaatagaaagggagaaa |
639 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||||| | ||||||| ||||| |||||| |
|
|
| T |
47600743 |
atgaatgaatctgtgtttcatgttcattttgaagtagtaacttgtgcaatggaaagagagaaa |
47600805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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