View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4630-Insertion-5 (Length: 1000)
Name: NF4630-Insertion-5
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-5 |
 |  |
|
Alignment Details
Target: chr7 (Bit Score: 780; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 8 - 962
Target Start/End: Complemental strand, 29685283 - 29684327
Alignment:
| Q |
8 |
caagcaacagctgactaagtgattttgctatcaacaataccactatgtaataggttcaattaagtccctcactggtgaagcaccaaaaactcatcattag |
107 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29685283 |
caagcaacagcggactaagtgattttgccatcaacaataccactatgtaataggttcaattaagtccctcactggtgaagcaccaaaaactcatcattag |
29685184 |
T |
 |
| Q |
108 |
attgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcctttccacacacaattatgtccatatctctatcctctccaacttccatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29685183 |
attgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcctttccacacacaattatgtccatatctctatcctctccaacttccatt |
29685084 |
T |
 |
| Q |
208 |
tttattttcacgcacatcctctccggtttccgaagttgtagatctagtgtgtggttttgtttttctaggtgagaccaagtgagaactattatttttcatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29685083 |
tttattttcacgcacatcctctccggtttcagaagttgcagatctagtgtgtggttttgtttttctaggtgagaccaagtgagaactattatttttcatc |
29684984 |
T |
 |
| Q |
308 |
aaatcaataaaagaagtatccattggcaaacaataacacattaatataatcaaattgagggtgatgagaccaaaccgttccaaatcgaagctgcttat-n |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
29684983 |
aaatcaataaaagaagtatccattggcaaacaataacacattaatataatcaaattgagggtgatgagacgaaaccgttccaaatcgaagccgcttataa |
29684884 |
T |
 |
| Q |
407 |
nnnnnnnnntagtctaaagcccagacgtataatcgccaaacattcattcaaattgattgcattttctcttttcacggttgtaatggaaatttaattgaag |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29684883 |
aaaaaattatagtctaaagcccagacgtataatcgccaaacattcattcaaattgattgcattttctcttttcacggttgtaatggaaatttaattgaag |
29684784 |
T |
 |
| Q |
507 |
ttgctggtcaaaattaaacctgtattctaccttggctatttaacccaatcaaagtaaaaacaataaaagcataaaggcaactataatctttgttcaattg |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29684783 |
ttgctggtcaaaattaaacctgtattctaccttggctatttaacccaatcaaaataaaaacaataaaagcataaaggcaactataatctttgttcaattg |
29684684 |
T |
 |
| Q |
607 |
caccatggtgtggccaaattttattgattaacaacacgggttccannnnnnnnnnnggaaagcatatgcatattgtggtgaattgaaaatgatgcaaatg |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29684683 |
caccatggtgtggccaaattttattgattaacaacacgggttcca-ttttatttttggaaagcatatgcatattgtggtgaattgaaaatgatgcaaatg |
29684585 |
T |
 |
| Q |
707 |
gaagagataagagtaggattgagtgtggaaaggaatagacgttcttgtttttatgttcaattgcactatggttttcaagccttacgaatactacttgttt |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29684584 |
gaagagataagagtaggattgagtgtggaaaggaatagacgttcttg--tttatgttcaattgcaccatggttttcaagccttacgaatactacttgttt |
29684487 |
T |
 |
| Q |
807 |
gtgnnnnnnncttcttataagtgaaaggagctttaataagtttaagcattttgtttagaaa-tttggaatagatattaaaagctaaactaacctgcaaca |
905 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
29684486 |
gtgtttttttcttcttataagtgaaaggagctttaataagtttaagcattttgtttagaaattttagaatagatattaaaagctaagctaacctgcaaca |
29684387 |
T |
 |
| Q |
906 |
acacactccc-atatagg-ttaattc-ataaatctataacagtatataaataaatttact |
962 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29684386 |
acacactcccaatataggtttaattcaataaatctataacagtatataaataaatttact |
29684327 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 10590317 - 10590428
Alignment:
| Q |
61 |
gttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcct |
160 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || | ||||||||| ||||||||| | ||||||| |||| || |
|
|
| T |
10590317 |
gttcaattaagtccctcatcggtgaagcaccaaaaaaacatcattagattgaatcaagggtcaagattatttaaaaataaaatcgagaacatctatttct |
10590416 |
T |
 |
| Q |
161 |
ttccacacacaa |
172 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10590417 |
ttccacacacaa |
10590428 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 46491718 - 46491605
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
||||||| |||||||||||| |||| | | |||||| | |||| |||| ||||||||| | | |||||||||||||||||| ||||||||||| | | |
|
|
| T |
46491718 |
ggttcaactaagtccctcaccggtggactatcaaaaaaataccatttgattaaatcaatggtccaaattatttgaaaataaaaataagaacatttagttc |
46491619 |
T |
 |
| Q |
160 |
tttccacacacaat |
173 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
46491618 |
tttccacacacaat |
46491605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 46491100 - 46491176
Alignment:
| Q |
126 |
attatttgaaaataaaaacaagaacatttattcctttccacacacaattatgtccatatctctatcctctccaactt |
202 |
Q |
| |
|
|||||||||||||||| | ||||||| || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46491100 |
attatttgaaaataaatatgagaacatccatctttttccacacacaattatgtccatacctctatcctctccaactt |
46491176 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 44059262 - 44059313
Alignment:
| Q |
8 |
caagcaacagctgactaagtgattttgctatcaacaataccactatgtaata |
59 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
44059262 |
caagtaacagctgactaagtgatgttgctatcagcaatatcactatgtaata |
44059313 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 10590998 - 10590885
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||| |||| |||||||||||||| | | ||||||||| ||| ||||| ||||| | || ||| |
|
|
| T |
10590998 |
ggttcaattaactccctcacctgtgaaacaccaaaaaaacatcgttagattgaatcaacagtcaagattattt-aaagtaaaattgagaacgtctactcc |
10590900 |
T |
 |
| Q |
160 |
tttccacacacaatt |
174 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10590899 |
tttccacacacaatt |
10590885 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 127765 - 127624
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || || || |||| |||||||||||||| | | |||||||||||||||| | ||||||| || |
|
|
| T |
127765 |
ggttcaattaagtccttcaccggtgaagcacaaataaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacatccatctt |
127666 |
T |
 |
| Q |
160 |
tttccacacacaattatgtccatatctctatcctctccaact |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127665 |
tttccacacacaattatgtccatatctctatcctctccaact |
127624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 127095 - 127166
Alignment:
| Q |
102 |
cattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcctttccacacacaat |
173 |
Q |
| |
|
|||| |||| ||||||||| | | |||||||||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
127095 |
catttgattaaatcaatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaat |
127166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 8309205 - 8309159
Alignment:
| Q |
13 |
aacagctgactaagtgattttgctatcaacaataccactatgtaata |
59 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
8309205 |
aacagctgactaagtgattttgctatcagcaatatcactatgtaata |
8309159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 5792254 - 5792143
Alignment:
| Q |
61 |
gttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcct |
160 |
Q |
| |
|
||||||||||| |||||| |||||||| |||| |||| ||||||||||||||||| | | || |||||||||| ||| |||||||| |||| || |
|
|
| T |
5792254 |
gttcaattaagatcctcaccagtgaagcataaaaatttcattgttagattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattact |
5792155 |
T |
 |
| Q |
161 |
ttccacacacaa |
172 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5792154 |
ttccacacacaa |
5792143 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 817 - 862
Target Start/End: Original strand, 42650039 - 42650084
Alignment:
| Q |
817 |
cttcttataagtgaaaggagctttaataagtttaagcattttgttt |
862 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
42650039 |
cttcttataagtagaaggagctttaagaagtttaagcattttgttt |
42650084 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 667 - 752
Target Start/End: Original strand, 5792081 - 5792170
Alignment:
| Q |
667 |
agcatatgcatatt-gtggtgaattgaaaatgatgcaaatgg--aagagat-aagagtaggattgagtgtggaaaggaatagacgttctt |
752 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| |||||| ||||||| ||| ||||| ||| |||||||||| |||||| |||||| |
|
|
| T |
5792081 |
agcatctgcatatttgtggtgaattgaaaatgatataaatgggaaagagataaagggtagggttgtgtgtggaaagtaatagatgttctt |
5792170 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 29333471 - 29333583
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||| ||||||||| |||||||||| | | |||||||||||||||| | ||||||||||||||| |
|
|
| T |
29333471 |
ggttcaatcaagttcctcaccaatgaagcaccaaaaactcttcattagatcgaatcaatggtccaaattatttgaaaataaatataagaacatttattcc |
29333570 |
T |
 |
| Q |
160 |
tttccacacacaa |
172 |
Q |
| |
|
||| |||||||| |
|
|
| T |
29333571 |
attctacacacaa |
29333583 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 2029074 - 2028936
Alignment:
| Q |
63 |
tcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattccttt |
162 |
Q |
| |
|
||||||||||||||||| |||||||||| || || || |||| ||||||||||||| | | |||||||||||||||| | ||||||| || ||| |
|
|
| T |
2029074 |
tcaattaagtccctcaccggtgaagcacaaataaaacaacatttaattgaatcaatggtccacattatttgaaaataaataggagaacatccatcttttt |
2028975 |
T |
 |
| Q |
163 |
ccacacacaattatgtccatatctctatcctctccaact |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2028974 |
acacacacaattatgtccatatctctatcctttccaact |
2028936 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 2028421 - 2028468
Alignment:
| Q |
126 |
attatttgaaaataaaaacaagaacatttattcctttccacacacaat |
173 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
2028421 |
attatttgaaaataaaaataagaacatttagttctttccacacacaat |
2028468 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 21261358 - 21261220
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
||||||||||| ||| |||| | |||||||| ||||| ||||||||||||||||||| || | ||||||||||| ||||| ||||||| ||||| |
|
|
| T |
21261358 |
ggttcaattaaatccttcaccgatgaagcacaaaaaaaccatcattagattgaatcaacggtcagaattatttgaaagtaaaattgagaacatgtattcg |
21261259 |
T |
 |
| Q |
160 |
tttccacacacaattatgtccatatctctatcctctcca |
198 |
Q |
| |
|
||| ||||||||||| | | |||||||||||||||||| |
|
|
| T |
21261258 |
ttttcacacacaatttttacaatatctctatcctctcca |
21261220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 16449573 - 16449685
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || |||| |||||||||||||| | ||||| ||| || | ||| | |||||||||||||| |
|
|
| T |
16449573 |
ggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaatcaatggtcaagattgttt-aagaaaaatatgagaacatttattcc |
16449671 |
T |
 |
| Q |
160 |
tttccacacacaat |
173 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16449672 |
tttccacacacaat |
16449685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 16459147 - 16459259
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || |||| |||||||||||||| | ||||| ||| || | ||| | |||||||||||||| |
|
|
| T |
16459147 |
ggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaatcaatggtcaagattgttt-aagaaaaatatgagaacatttattcc |
16459245 |
T |
 |
| Q |
160 |
tttccacacacaat |
173 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16459246 |
tttccacacacaat |
16459259 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 21257947 - 21257836
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| ||| | |||||||||||||||| | ||||||| ||| ||||| |||||||| |||| | |
|
|
| T |
21257947 |
ggttcaattaagttcctcaccagtgaagcaccaaaaaaacatta-tagattgaatcaatggttaaaattatttaaaagtaaaattaagaacatctatttc |
21257849 |
T |
 |
| Q |
160 |
tttccacacacaa |
172 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
21257848 |
tttccacaaacaa |
21257836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 35897909 - 35897845
Alignment:
| Q |
105 |
tagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcctttccacaca |
169 |
Q |
| |
|
|||||| |||||||||| || |||||| |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
35897909 |
tagattaaatcaatggctgaaattattcaaaaataaaaatgagaacatatattcctttccacaca |
35897845 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 202595 - 202707
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || |||| |||||||| ||||| | ||||| ||| || | ||| | |||||||||||||| |
|
|
| T |
202595 |
ggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaataaatggtcaagattgttt-aagaaaaataagagaacatttattcc |
202693 |
T |
 |
| Q |
160 |
tttccacacacaat |
173 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
202694 |
tttccacacacaat |
202707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 317432 - 317544
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || |||| |||||||| ||||| | ||||| ||| || | ||| | |||||||||||||| |
|
|
| T |
317432 |
ggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaataaatggtcaagattgttt-aagaaaaataagagaacatttattcc |
317530 |
T |
 |
| Q |
160 |
tttccacacacaat |
173 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
317531 |
tttccacacacaat |
317544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 2226730 - 2226617
Alignment:
| Q |
60 |
ggttcaattaagtccctcactggtgaagcaccaaaaactcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcc |
159 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| || || |||| |||||||||||||| | ||||| ||| || | ||| | |||||||||||||| |
|
|
| T |
2226730 |
ggttcaattaattccctcacaggtgaagcaccacaataacaccatttgattgaatcaatggtcaagattgttt-aagaaaaatatgagaacatttattcc |
2226632 |
T |
 |
| Q |
160 |
-tttccacacacaat |
173 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2226631 |
ttttccacacacaat |
2226617 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University