View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630-Insertion-6 (Length: 998)
Name: NF4630-Insertion-6
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630-Insertion-6 |
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| [»] scaffold0170 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 48531958 - 48531718
Alignment:
| Q |
8 |
ctggtaaccctgcttgttttgttggaaaattgagtgttactattttgatttggaggccagaagaaacagcacgagaaagaactgaagtaaaacgtgatgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48531958 |
ctggtaaccctgcttgttttgttggaaaattgagtgttactattttgatttggaggccagaagaaacagcacgagaaagaactgaagtaaaacgtgatgc |
48531859 |
T |
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| Q |
108 |
attttttggtgtagtaaatatggtaacaataacaccacgttgtgctaacagtttagcaatgtccatcataggtataatgtgtccttgtgctattaaggga |
207 |
Q |
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| T |
48531858 |
attttttggtgtagtaaatatggtaacaataacaccacgttgtgctaacagtttagcaatgtctatcataggtataatgtgtccttgtgctattaaggga |
48531759 |
T |
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| Q |
208 |
aataatacaaaatgaggaacatcattaatgtttgctggcaa |
248 |
Q |
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| T |
48531758 |
aataatacaaaatgaggaacatcattaatgtttgctggcaa |
48531718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 41510579 - 41510354
Alignment:
| Q |
20 |
cttgttttgttggaaaattgagtgttactattttgatttggaggccagaagaaacagcacgagaaagaactgaagtaaaacgtgatgcattttttggtgt |
119 |
Q |
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||||||||| ||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41510579 |
cttgttttgatggaaaatttagggttacaattttgatttgaaggccagaagaaacagcacgagaaagaactgaagtaaaacgtgaagcattttttggtgt |
41510480 |
T |
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| Q |
120 |
agtaaatatggtaacaataacaccacgttgtgctaacagtttagcaatgtccatcataggtataatgtgtccttgtgctattaagggaaataatacaaaa |
219 |
Q |
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| T |
41510479 |
tgtgaatattgtaacaataacaccacgttgtgctaagagttttgctatgtctatcattgggataatgtggccttgtgctattaaaggaaataacacaaag |
41510380 |
T |
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| Q |
220 |
tgaggaacatcattaatgtttgctggcaa |
248 |
Q |
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|| |||| |||||||||||||| |||| |
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| T |
41510379 |
tgtggaa---cattaatgtttgcttgcaa |
41510354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 41520275 - 41520066
Alignment:
| Q |
20 |
cttgttttgttggaaaattgagtgttactattttgatttggaggccagaagaaacagcacgagaaagaactgaagtaaaacgtgatgcattttttggtgt |
119 |
Q |
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| T |
41520275 |
cttgttttgatgaaaaatttagggttacaattttgatttgaaggccagaagaaacagcacgagaaagaactgaagtaaaacgtgaagcattttttggtgt |
41520176 |
T |
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| Q |
120 |
agtaaatatggtaacaataacaccacgttgtgctaacagtttagcaatgtccatcataggtataatgtgtccttgtgctattaagggaaataatacaaaa |
219 |
Q |
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||| |||||||||||| ||||||||||||||||||| ||||| || ||||| || || || |||||||| ||| |||||||||||||| || ||||| |
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| T |
41520175 |
agtgaatatggtaacagtaacaccacgttgtgctaagagttttgctatgtctattatggggataatgtgggcttttgctattaagggaagcaacacaaag |
41520076 |
T |
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| Q |
220 |
tgaggaacat |
229 |
Q |
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| T |
41520075 |
tgtggaacat |
41520066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 24214336 - 24214408
Alignment:
| Q |
249 |
taggggtggacaaacggtcggttcggccggatttcggttcaaaaatctaaatccgaacgtcaaccgcgggtgg |
321 |
Q |
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| T |
24214336 |
tagggctggacaaacggtcggttcggtcggatttcgggtgaaaaacctcaatccgaaggcaaaccgcgggtgg |
24214408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 249 - 478
Target Start/End: Original strand, 19180 - 19409
Alignment:
| Q |
249 |
taggggtggacaaacggtcggttcggccggatttcggttcaaaaatctaaatccgaacgtcaaccgcgggtggtattaagcagcccaattccgcccatca |
348 |
Q |
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| T |
19180 |
taggggtggacaaacggtcggttcggccggattttggttcaaaaatctaaatccgaacgtcaaccgcgggtggtattaagcagtccaaatccgcccatca |
19279 |
T |
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| Q |
349 |
caacactaggttattgcggttttcgggttgggcgaaatacggtttcgacgggtgggttgaaccgggtatgaacaaacaaaaaactctacagagccatgaa |
448 |
Q |
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| T |
19280 |
caacactcggttattgcggttttcggattgggtgaaatacggtttcgacgggtgggttgaaccgggtatgaacaaacaaaatcctctacagagccatgaa |
19379 |
T |
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| Q |
449 |
agttcagaaattctccattgatgaaagcac |
478 |
Q |
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| T |
19380 |
agttcagaaattctccattgatgaaagcac |
19409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 577 - 749
Target Start/End: Original strand, 19727 - 19899
Alignment:
| Q |
577 |
cgcaaatatcatgaaaattctttcagatctagttgcggttgcatcttgtcttctttttcttgaatcatatttggaagcttgtgtagatctttgaaccttg |
676 |
Q |
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| T |
19727 |
cgcaaatatcatgaaaattctttcagatctagttgcggttgcagcttgtcttctttttcttgaatcatatttggaagcttgtgtagatctttgaaccttg |
19826 |
T |
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| Q |
677 |
agcagacttaatgcaaatgttacatttacttttgtttcttgaaatgttgggaattatagaaaataagtttgtt |
749 |
Q |
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| T |
19827 |
agcagacttaatgcaaatgttacatttacttttgttccttgaaatgttggcaattatagaaaataagtttgtt |
19899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 19543 - 19619
Alignment:
| Q |
402 |
gggttgaaccgggtatgaacaaacaaaaaactctacagagccatgaaagttcagaaattctccattgatgaaagcac |
478 |
Q |
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| T |
19543 |
gggttgaaccgggtatgaacaaacaaaatcctctacagagccatgaaagttcagaaattctccattgatgaaagcac |
19619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 600 - 712
Target Start/End: Complemental strand, 3001706 - 3001600
Alignment:
| Q |
600 |
cagatctagttgcggttgcatcttgtcttctttttcttgaatcatatttggaagcttgtgtagatctttgaaccttgagcagacttaatgcaaatgttac |
699 |
Q |
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| T |
3001706 |
cagatctagttgcggttgcagcttgtcttctt------gaatcaaatatggaagcatgtgtagatctatgaaccttgagcagatttgatgcaaatgctat |
3001613 |
T |
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| Q |
700 |
atttacttttgtt |
712 |
Q |
| |
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| T |
3001612 |
agttatttttgtt |
3001600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 40158454 - 40158526
Alignment:
| Q |
249 |
taggggtggacaaacggtcggttcggccggatttcggttcaaaaatctaaatccgaacgtcaaccgcgggtgg |
321 |
Q |
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||||| |||||||||||||||||||| ||||||| || | ||||| || |||||||| | |||||||||||| |
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| T |
40158454 |
tagggctggacaaacggtcggttcggtcggattttgggtgaaaaacctcaatccgaaggcaaaccgcgggtgg |
40158526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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