View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4630_low_1 (Length: 560)
Name: NF4630_low_1
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 4686371 - 4686893
Alignment:
| Q |
20 |
tcaatgttgtcatacacaaaccaacaaggcttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagattttcaggtgattatcatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686371 |
tcaatgttgtcatacacaaaccaacaaggcttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagattttcaggtgattatcatc |
4686470 |
T |
|
| Q |
120 |
ctaatactacttttgatgctttgaatcttcaattttcaaatgctacttcttcaactcatgaacaagtttatgatcaagaacatcatgtgggatcttctac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686471 |
ctaatactacttttgatgctttgaatcttcaattttcaaatgctacttcttcaactcatgaacaagtttatgatcaagaacatcatgtgggatcttctac |
4686570 |
T |
|
| Q |
220 |
ttgtgttaattcttccaatgataacaaccataaccaagtacaatttgcaataaatggtcaatactttgactcggtgcaagaagaacaaggcaagttcatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686571 |
ttgtgttaattcttccaatgataacaaccataaccaagtacaatttgcaataaatggtcaatactttgactcggtgcaagaagaacaaggcaagttcatt |
4686670 |
T |
|
| Q |
320 |
ccggaaattgatcatatggtatctaccaattatccaccaagatttgatgggttggaattcttttatggtgaagaagacttgaatattgatcataataaga |
419 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686671 |
ccagaaattgatcatatggtatctaccaattatccaccaagatttgatgggttggaattcttttatggtgaagaagacttgaatattgatcataataaga |
4686770 |
T |
|
| Q |
420 |
tacaaggttctagcactaattggagtgaagctaccacttcaagttatcatcatcctcttgattcgaaataccaaggttaagttgtgatttgtgaggtaag |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686771 |
tacaaggttctagcactaattggagtgaagctaccacttcaacttatcatcatcctcttgattcaaaataccaaggttaagttgtgatttgtgaggtaag |
4686870 |
T |
|
| Q |
520 |
attagtggttttaaattgcggtt |
542 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4686871 |
attagtggttttaaattgcggtt |
4686893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 47846366 - 47846314
Alignment:
| Q |
50 |
ttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagatt |
102 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| || |||||||| || ||||| |
|
|
| T |
47846366 |
ttcaacgatcaagattctattagaaaatttctaatcaagcttggtgggagatt |
47846314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University