View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4630_low_4 (Length: 345)
Name: NF4630_low_4
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 17714935 - 17715236
Alignment:
| Q |
15 |
acttttgatgtcataaaagcaaaagcaattttcatgtgaggatgtactgaatttgaactatgttattgtgtatcttattttgaaatatgacaatatgttt |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17714935 |
acttttgatgtcaaaaaagcaaaagcaattttcatgtgaggatgtgctgaatttgaactatgttattttatatcttattttgaaatatgacaatatgttt |
17715034 |
T |
|
| Q |
115 |
ataagaagagataattctcacgtcacaagccgattttgtaaggatgggtaagtccgatgtgggactcttaataatcatgtatggaaaagtttgtattttg |
214 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||| |||||||||| |||||||| | |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
17715035 |
ataaggggagacaattctcacatcaca------ttttgtaagaatgggtaagttcgatgtggaattcttaacaatcatatatg-aaaagtttgtattttg |
17715127 |
T |
|
| Q |
215 |
agacaagtacaataacttgtgatgtataatagtaatttatagtcacataattcgcaatttatgttggtacacggtacacgttcacggtgcatatgacaaa |
314 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17715128 |
aaacaagtacaataacttgtgatgtataatagtaatttatagtcgcataattcacaaattatgttggtacacggtacaggttcacggtgcatatgacaaa |
17715227 |
T |
|
| Q |
315 |
aattcgata |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
17715228 |
aattcgata |
17715236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 19016164 - 19016465
Alignment:
| Q |
15 |
acttttgatgtcataaaagcaaaagcaattttcatgtgaggatgtactgaatttgaactatgttattgtgtatcttattttgaaatatgacaatatgttt |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
19016164 |
acttttgatgtcaaaaaagcaaaagcaattttcatgtgaggatgtgctgaatttgaactatgttattttatatcttattttgaaatatgacaatatgttt |
19016263 |
T |
|
| Q |
115 |
ataagaagagataattctcacgtcacaagccgattttgtaaggatgggtaagtccgatgtgggactcttaataatcatgtatggaaaagtttgtattttg |
214 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||| |||||||||| |||||||| | |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
19016264 |
ataaggggagacaattctcacatcaca------ttttgtaagaatgggtaagttcgatgtggaattcttaacaatcatatatg-aaaagtttgtattttg |
19016356 |
T |
|
| Q |
215 |
agacaagtacaataacttgtgatgtataatagtaatttatagtcacataattcgcaatttatgttggtacacggtacacgttcacggtgcatatgacaaa |
314 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19016357 |
aaacaagtacaataacttgtgatgtataatagtaatttatagtcgcataattcacaaattatgttggtacacggtacaggttcacggtgcatatgacaaa |
19016456 |
T |
|
| Q |
315 |
aattcgata |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
19016457 |
aattcgata |
19016465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University