View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4630_low_5 (Length: 235)
Name: NF4630_low_5
Description: NF4630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4630_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 32378424 - 32378242
Alignment:
| Q |
1 |
tcttagcggtaagatatatactaacgcatgtttggagtgaagctccaatttgtatgttcattggagaatctcatgcaagacgtggattatttgtatgctc |
100 |
Q |
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| T |
32378424 |
tcttagcggtaagatttatactaacgcatgtttggagtgaagctccaatttgtatgctcattggagaatcccatgcaagatgtggattatttgtatgctc |
32378325 |
T |
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| Q |
101 |
ttagcggtaaatttaaatttatgttaacgtcaaatatttgtatgctctttgttgaa--ccatgcaagatgcggattattaaaa |
181 |
Q |
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| T |
32378324 |
ttagcggtaaatttaaatttatgttaacgtcaaatatttgtatgctctttgttgaaccccatgcaagacgcggattattaaaa |
32378242 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 17126468 - 17126516
Alignment:
| Q |
3 |
ttagcggtaagatatatactaacgcatgtttggagtgaagctccaattt |
51 |
Q |
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| T |
17126468 |
ttagcggtaagatatatactaatgcacgtttggagcgaagttccaattt |
17126516 |
T |
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