View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4631-Insertion-1 (Length: 1039)
Name: NF4631-Insertion-1
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 365 - 1039
Target Start/End: Complemental strand, 36413279 - 36412597
Alignment:
| Q |
365 |
cttgcaataaccaaataaaaatataacaaatcacacagaaagttcatacttaaatcacatatgtttcattgcccatccaatattataaaatattgattgc |
464 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
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| T |
36413279 |
cttgcaataaccaaatagaaatataacaaatcacacggaaagttcatacttaaatcacatatgcttcattatccatccaatattataaaatattaattgc |
36413180 |
T |
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| Q |
465 |
cgatgatgatgttgaatcatttacatctaataaaatattgatcgttgatgataatcttgattgttgtgatatatttgtgattttcaattaaaagtttgct |
564 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36413179 |
cgatgatgatgttgaatcatttacgtctaataaaatattgatcgttgatgataatcttgattgttgtgatatatttgtgattttcaattaaaagtttgct |
36413080 |
T |
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| Q |
565 |
atattatactagtatttaa--------ttttgatttactaccatac-----ttatatcattgtcatttgtaatcgtt---------ctaagtgaaactta |
642 |
Q |
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||||||||||||| |||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |
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| T |
36413079 |
atattatactagttgttaaactcttaattttgatttactaccatacatagattaaatcattgtcatttgtaatcgttgctgagtttctaagtgaaactta |
36412980 |
T |
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| Q |
643 |
tgtattaagcaacatcatatggtaggctcaatcagagtcagaaacaatccatgtcttcatctcttacaacaatggcaaagcctaaccatgaaacaaacaa |
742 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36412979 |
tgtattaagcaacatcatatggtaggctcaatcaga------aacaatccatgtcttcatctcttacaacaatggcaaaacctaaccatgaaacaaacaa |
36412886 |
T |
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| Q |
743 |
aacaaatccacgctcatgccatcaccaacaacctcactcgtttctcctacatttccagcagaatcctagcattcttcggctctctcaccacgcggcggat |
842 |
Q |
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| T |
36412885 |
aacaaatccacgctcatgccatcaccaacaacctcactcgtttctcctacatttccagcagaatcctagcattcttc-gctctctcaccacgcggc-gat |
36412788 |
T |
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| Q |
843 |
tttcgctatgcagaaactcttttcacagacatggcccaatccaaatatcttcgattacaactccataatcactttcttaccacaacaaactcacaattcc |
942 |
Q |
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| T |
36412787 |
tttcgctatgcagaaactcttttcacacacat-tcccaatccaaatatcttcgattacaactccataatcac-ttctta-cacaacaaactcacaattcc |
36412691 |
T |
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| Q |
943 |
ataaattattcttcggtttcaccaaaatgcttaacaccaacattcgccccaattctcaataccttcaccacgcctggtaaaagcatggcgtttctct |
1039 |
Q |
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| T |
36412690 |
ataaattattcttcgttttcaccaaaatgcttaacaccaacattcgccccaattctc-ataccttcaccacg-ctggtaaaagcat-gcgtttctct |
36412597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 36413455 - 36413304
Alignment:
| Q |
192 |
cgtaagttcgcacatattactatatcgtcgaatacacaacatcacatcgacatcaaaacaaacacgatacgcaataaacacaacaggcaccgaattgaaa |
291 |
Q |
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|||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| |
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| T |
36413455 |
cgtacgtttgcacatattactatattgtcgagtacacaacatcacatcgacatcaaaataaacacgatatgcaataaacacaacaggca-ttaattgaaa |
36413357 |
T |
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| Q |
292 |
tcaaaagcaaaccaagcacaataaaatcaaattgagttgattcaaataatctt |
344 |
Q |
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| T |
36413356 |
tcaaaagcaaaccaaacacaataaaatcaaattgagttgattctaataatctt |
36413304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 36413511 - 36413456
Alignment:
| Q |
101 |
atgaaaagatcatattaactttccaaaacacgaacaacaagaggaatgaattcttt |
156 |
Q |
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| T |
36413511 |
atgaaaagatcatattaactttccaaaacacgaacaacaagaggaatgaattcttt |
36413456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 36413604 - 36413573
Alignment:
| Q |
8 |
gtgcatgttatcaaaccactcaagtcaatatg |
39 |
Q |
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| T |
36413604 |
gtgcatgttatcaaaccactcaagtcaatatg |
36413573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 7e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 680 - 1013
Target Start/End: Complemental strand, 52097440 - 52097113
Alignment:
| Q |
680 |
tcagaaacaatccatgtcttcatctcttacaacaatggcaaagcctaaccatgaaacaaacaaaacaaatccacgctcatgccatcaccaacaacctcac |
779 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
52097440 |
tcagaaacagtccatgtcttcatctcttacaacaatggcaaaacctaaccatgaaacaaacaaaacaaatccacgctcatgctattgccaacaacctcac |
52097341 |
T |
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| Q |
780 |
tcgtttctcctacatttccagcagaatcctagcattcttcggctctctcaccacgcggcggattttcgctatgcagaaactcttttcacagacatggccc |
879 |
Q |
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| T |
52097340 |
tcgtttctcctacatctccagcagaatcctagcattctt-tgctgcctcaccgcgtggc-gattttcgctatgcagaaactctcttcacacacat-gccc |
52097244 |
T |
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| Q |
880 |
aatccaaatatcttcgattacaactccataatcactttcttaccacaacaaactcacaattccataaattattcttcggtttcaccaaaatgcttaacac |
979 |
Q |
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| T |
52097243 |
aatccaaatatattcgattacaactctataatcac-ttcata-cacaacaaactcacaattcgataaatcactctctgttttcaccaaaatgctcaacat |
52097146 |
T |
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| Q |
980 |
caacattcgccccaattctcaataccttcaccac |
1013 |
Q |
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| T |
52097145 |
gaacattcgccccaattctc-acaccttcaccac |
52097113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 571
Target Start/End: Original strand, 50591895 - 50591939
Alignment:
| Q |
527 |
gttgtgatatatttgtgattttcaattaaaagtttgctatattat |
571 |
Q |
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| T |
50591895 |
gttgtaatatatttgtggttttcaattaaaagtttgctatattat |
50591939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 35719887 - 35719842
Alignment:
| Q |
526 |
tgttgtgatatatttgtgattttcaattaaaagtttgctatattat |
571 |
Q |
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| T |
35719887 |
tgttgtaatatatttgtggttttcaattaaaagtttgttatattat |
35719842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 10787081 - 10787154
Alignment:
| Q |
271 |
acaacaggcaccgaattgaaatcaaaagcaaaccaagcacaataaaatcaaattgagttgattcaaataatctt |
344 |
Q |
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| T |
10787081 |
acaacatgcatcgaaccgaaatcaaaagcaaaccaagcatgatagattcaaattcagttgattctaagaatctt |
10787154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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