View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4631-Insertion-10 (Length: 641)
Name: NF4631-Insertion-10
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-10 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 47 - 641
Target Start/End: Complemental strand, 3503125 - 3502531
Alignment:
| Q |
47 |
tttctatgagtaagtatttgtaatttggtttacttgcctttttgtattttggacttgatgtttctttgaagttttgattcgattgtgatattgaggtatt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3503125 |
tttctatgagtaagtatttgtaatttggtttacttgcctttttgtattttggacttgatgtttctttgaagttttgattcgattgtgatattgaggtatt |
3503026 |
T |
|
| Q |
147 |
gaatcaatgtttgattgtatttcaggattgtattttttggaatgtttattggaatcactgaatactgaaagggacatatctgataatttcaaaattgatt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
3503025 |
gaatcaatgtttgattgtatttcaggattgtattttttggaatgtttattggaatcactgaatactcaaagagacatatctgataatttcaaaattgatt |
3502926 |
T |
|
| Q |
247 |
ctttacgagggaatttgaaatcttatcctcaagacatttgcatcttaaggtgatcaagaatttcttcaaagttcatacgagaatttgcttctatcagaga |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3502925 |
ctttacgagggaatttgaaatcttatcctcaagacatttgcatcttaaggtgattaagaatttcttcaaagttcatacgagaatttgcttctatcagaga |
3502826 |
T |
|
| Q |
347 |
tgataattggttcaaatactttgtattgaattcctgaccagatgatccaaagctattcttcaaatcatacaaattgaccatcagacgaagcaacaactat |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3502825 |
ggataattggttcaaatactttgtattgaattcctgaccagatgatccaaagctattcttcaaatcatacaaattgaccatcagacgaagcaacaactat |
3502726 |
T |
|
| Q |
447 |
caagcgaaatgatagaaataagacaaagtgacattacacttcttcggtctagcagaattgttttcaattcagatcagacaattctatacttatttggtgc |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3502725 |
caagcgaaatgatagaaataagacaaagtgacattacacttcttcggtctagcagaattgttttcaattcagatcagacaaatctatacttatttggtgc |
3502626 |
T |
|
| Q |
547 |
aaatgaattgttttctatttagattatgcttttgttccttctaaatgaaatggcttaccacctgattaagctcaaggatttgcttttgttagtga |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3502625 |
aaatgaattgttttctatttagattatgcttttgttccttctaaatgaaatggcttaccacctgattaagctcaaggatttgcttttgttagtga |
3502531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 3508963 - 3508919
Alignment:
| Q |
8 |
aatcctgcctgtcttttgccgatctgcatgtgatgatattttcta |
52 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3508963 |
aatcctgcctgtcttttgccgatttgcatgtgatgatattttcta |
3508919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 47178065 - 47178154
Alignment:
| Q |
61 |
tatttgtaatttggttt-acttgcctttttgtattttggacttgatgtttctttgaagttttgattcgattgtgatattgaggtattgaa |
149 |
Q |
| |
|
|||||| ||||||| || ||||| || |||||| |||||| | ||||||||||||||||||| ||| | ||||||||| || |||||||| |
|
|
| T |
47178065 |
tatttgaaatttgggttcacttgactctttgtaatttggagtcgatgtttctttgaagttttaatttgcttgtgatatcgaagtattgaa |
47178154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University