View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4631-Insertion-12 (Length: 522)
Name: NF4631-Insertion-12
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 522
Target Start/End: Original strand, 3700879 - 3701413
Alignment:
| Q |
5 |
acattatagaggtgataata----ataacctaagagcaactttaacggacgatatcatcatccatttttatgatttttactaaagtttgcggtttgagag |
100 |
Q |
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| T |
3700879 |
acattatagaggtgataatagataataacctaagagcaactttaacggacaatgtcatcatccatttt-atggtttttattaaagtttgctgtttgagag |
3700977 |
T |
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| Q |
101 |
atctccggcacaacaatnnnnnnntgtattatatatgcataaatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagtnnnn |
200 |
Q |
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| T |
3700978 |
atctccgacacaacagtaaaaaaatgtattatatatgcgtaaatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagtaaaa |
3701077 |
T |
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| Q |
201 |
nnnnnnnnnngaatgaattattttatgatatggctcaatgagatacaaaataatctttaaagaagatcaccattgtagttgctctaaaga---------- |
290 |
Q |
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| T |
3701078 |
aaaaaaa---gaatgaattattttatgatatggctcaatgagatacaaaataatctttaaagaagatcaccattgtagttgctctaaagactaaaataga |
3701174 |
T |
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| Q |
291 |
-------gtccgtaaattcttcacctaaaatattctaacttaactctttgacataaactcgagcacttcaatgagatgttaaaagatatctttcaactta |
383 |
Q |
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| T |
3701175 |
atctattgtccgtaaattcttcacctaaaatattctaacttaactctttgacataaactcgggcactacaatgagatgttaaaagatatctttcaactta |
3701274 |
T |
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| Q |
384 |
atcaaagtatgtcctcgaatccaactcaaaaatgcaatattgttaaatctctgagagctatgtcataacaaaaactttgtattgaaaaatgacatgtctt |
483 |
Q |
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| T |
3701275 |
atcaaagtatgtcctcgaatccaactctaaaatgcaacattgttaaatctctgacagctatgtcataacaaaaaccttcttttggaaaatgacatgtctt |
3701374 |
T |
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| Q |
484 |
ctcggatatttttccaaatttccaatgcactctatccgg |
522 |
Q |
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| T |
3701375 |
ctcggagagtcttccaaatttccaatgcactctatccgg |
3701413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 3715080 - 3715125
Alignment:
| Q |
245 |
acaaaataatctttaaagaagatcaccattgtagttgctctaaaga |
290 |
Q |
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| T |
3715080 |
acaaaataatctttaaagaagatcaccattgaagttgctctaaaga |
3715125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 3715143 - 3715184
Alignment:
| Q |
291 |
gtccgtaaattcttcacctaaaatattctaacttaactcttt |
332 |
Q |
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| T |
3715143 |
gtccgtaaattcttaacctaaaatattctaagttaactcttt |
3715184 |
T |
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